Factsheet for Os01t0511000-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G68510.1	Thale cress	mitochondrion, nucleus	50.0	39.91
Bra004315.1-P	Field mustard	mitochondrion	50.0	39.24
CDX96013	Canola	mitochondrion	50.0	39.24
HORVU3Hr1G016320.1	Barley	cytosol, nucleus, plastid	58.6	38.65
KRH45269	Soybean	nucleus	45.16	38.36
Zm00001d029506_P001	Maize	cytosol, mitochondrion, nucleus, plastid	64.52	38.34
CDY38588	Canola	cytosol, mitochondrion, nucleus	49.46	38.33
TraesCS3D01G091700.1	Wheat	cytosol, nucleus, plastid	59.68	37.37
TraesCS3B01G106900.1	Wheat	cytosol, mitochondrion, nucleus	58.6	36.95
PGSC0003DMT400037711	Potato	mitochondrion	49.46	36.36
KRG90816	Soybean	nucleus	43.55	36.16
OQU92400	Sorghum	mitochondrion, nucleus, plastid	63.44	35.98
Zm00001d038717_P001	Maize	cytosol, mitochondrion, nucleus	61.83	35.94
Solyc05g009320.2.1	Tomato	mitochondrion	48.92	35.83
Os03t0445700-01	Rice	cytosol, mitochondrion, plastid	39.25	35.78
Zm00001d010751_P001	Maize	cytosol, mitochondrion, nucleus	60.22	35.78
Zm00001d010749_P001	Maize	plastid	54.3	35.69
VIT_01s0011g03530.t01	Wine grape	cytosol, nucleus, plastid	46.24	35.68
TraesCS5A01G529400.1	Wheat	nucleus	48.92	33.96
TraesCS5A01G529300.1	Wheat	cytosol, nucleus, plastid	51.08	32.87
Os07t0589000-01	Rice	cytosol, mitochondrion, nucleus, plastid	38.71	31.86
Os03t0609500-01	Rice	cytosol, nucleus, plastid	39.25	31.47
KXG22356	Sorghum	plastid	52.15	29.22
Os01t0129600-00	Rice	cytosol	29.03	15.93

Protein Annotations

EnsemblPlants:Os01t0511000-01	EnsemblPlantsGene:Os01g0511000	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304	PANTHER:PTHR31304:SF9
PFAM:PF03195	PFscan:PS50891	ProteinID:BAF05083.1	ProteinID:BAS72379.1	SEG:seg	UniParc:UPI0000DD8B3E
UniProt:Q0JME5	MapMan:15.5.24	:	:	:	:

Description

Similar to LOB domain protein 40. (Os01t0511000-01)

Coordinates

chr1:-:17975866..17977327

Molecular Weight (calculated)

20758.4 Da

IEP (calculated)

12.287

GRAVY (calculated)

-0.631

Length

186 amino acids

Sequence
(BLAST)

001: MRMSCNGCRV LRKGCSEGCT IRPCLQWIKT PEAQANATVF LAKFYGRAGL LNLLAAGPDH LRPAVFRSLL YEACGRIVNP IYGSVGLLWS GQWQACQAAV
101: EAVLKGDPAA QGLRHPPRLQ GRRGRRRRQP APRRARRPHP LQARLLQLQL QARRQACRSS RRQARRVPQQ QQPDARDGAG GGGRRR

Best Arabidopsis Sequence Match ( AT3G02550.1 )
(BLAST)

001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML

Arabidopsis Description

LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.