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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d029602_P001 Maize cytosol, mitochondrion, nucleus, plastid 78.43 73.73
EER92081 Sorghum cytosol, mitochondrion, nucleus, plastid 81.37 70.64
Os07t0589000-01 Rice cytosol, mitochondrion, nucleus, plastid 71.57 64.6
Os03t0609500-01 Rice cytosol, nucleus, plastid 47.55 41.81
Os01t0511000-01 Rice cytosol, nucleus, plastid 35.78 39.25
Os01t0129600-00 Rice cytosol 27.45 16.52
Protein Annotations
EMBL:AK071624EnsemblPlants:Os03t0445700-01EnsemblPlantsGene:Os03g0445700EntrezGene:4333227InterPro:IPR004883InterPro:LOB
PANTHER:PTHR31304PANTHER:PTHR31304:SF1PFAM:PF03195PFscan:PS50891ProteinID:AAT85783.1ProteinID:ABF96901.1
ProteinID:BAF12382.1ProteinID:BAS84891.1ProteinID:EAZ27464.1RefSeq:XP_015629353.1SEG:segUniParc:UPI00004024DF
UniProt:Q6AV61MapMan:15.5.24::::
Description
LATERAL ORGAN BOUNDARIES DOMAIN 37, lateral organ boundaries domain protein 37Similar to LOB domain protein 39. (Os03t0445700-01)
Coordinates
chr3:-:18935194..18936295
Molecular Weight (calculated)
21038.3 Da
IEP (calculated)
8.144
GRAVY (calculated)
0.042
Length
204 amino acids
Sequence
(BLAST)
001: MSCNGCRVLR KGCSDGCVLR PCLQWIDAAD AQGHATVFVA KFFGRAGLLS FISAVPEAQR PALFQSLLYE AAGRTINPVH GAVGLLWTGN WPLCQAAVET
101: VLRGGAIGPL PELGGACGGA GGDLYGAAKR NGGWSTFSTA KRVRKAEVPE APSCDLGLCL SPGSPPAVGE RKPALRPGTP SMSSDESGTT TGGERDPVLL
201: NLFV
Best Arabidopsis Sequence Match ( AT5G67420.1 )
(BLAST)
001: MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPDSQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV
Arabidopsis Description
LBD37LOB domain-containing protein 37 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN11]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.