Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d021995_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 76.55 | 80.47 |
| Os03t0445700-01 | Rice | cytosol, mitochondrion, plastid | 64.6 | 71.57 |
| EER97470 | Sorghum | cytosol, nucleus, plastid | 65.49 | 69.16 |
| Zm00001d006739_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 64.6 | 68.87 |
| TraesCS2B01G212400.1 | Wheat | plastid | 61.5 | 58.65 |
| TraesCS2A01G194500.1 | Wheat | cytosol, nucleus, plastid | 60.62 | 58.55 |
| HORVU2Hr1G035160.1 | Barley | endoplasmic reticulum, nucleus, plastid | 61.5 | 50.18 |
| Os03t0609500-01 | Rice | cytosol, nucleus, plastid | 43.81 | 42.67 |
| Os01t0511000-01 | Rice | cytosol, nucleus, plastid | 31.86 | 38.71 |
| TraesCS2D01G193400.1 | Wheat | cytosol, nucleus, plastid | 34.07 | 31.69 |
| Os01t0129600-00 | Rice | cytosol | 21.68 | 14.45 |
Protein Annotations
| EMBL:AK069813 | EnsemblPlants:Os07t0589000-01 | EnsemblPlantsGene:Os07g0589000 | EntrezGene:4343768 | InterPro:IPR004883 | InterPro:LOB |
| PANTHER:PTHR31304 | PANTHER:PTHR31304:SF1 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:BAC83753.1 | ProteinID:BAF22062.1 |
| ProteinID:BAT02423.1 | RefSeq:XP_015647207.1 | SEG:seg | UniParc:UPI00001BF43A | UniProt:Q7EZ26 | MapMan:15.5.24 |
Description
Lateral organ boundaries, LOB domain containing protein. (Os07t0589000-01)
Coordinates
chr7:+:23996515..23997565
Molecular Weight (calculated)
23217.5 Da
IEP (calculated)
7.644
GRAVY (calculated)
-0.115
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCNGCRVLR KGCSEGCVLR PCLQWIDGAE AQGHATVFVA KFFGRAGLMS FLTAVPEPQR AAVFQSLLYE AAGRTINPVG GAVGLLSGGS WHLCQAAVDT
101: VLRGGGIQPL PDQVDAAAAG GRDVFASTAR RAMGGCSTFS TAKRSTTTTT TKNPGTPHDA AAAAPQPEPS CDLGLWLSPG SPPAPGDRRS GGRRADTPSM
201: NSEGSVTTCG VVGDGEREPE LLNLFV
101: VLRGGGIQPL PDQVDAAAAG GRDVFASTAR RAMGGCSTFS TAKRSTTTTT TKNPGTPHDA AAAAPQPEPS CDLGLWLSPG SPPAPGDRRS GGRRADTPSM
201: NSEGSVTTCG VVGDGEREPE LLNLFV
001: MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPDSQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV
Arabidopsis Description
LBD37LOB domain-containing protein 37 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.