Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G212400.1 | Wheat | plastid | 81.59 | 95.36 |
| TraesCS2A01G194500.1 | Wheat | cytosol, nucleus, plastid | 80.14 | 94.87 |
| Zm00001d006739_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 53.79 | 70.28 |
| EER97470 | Sorghum | cytosol, nucleus, plastid | 53.79 | 69.63 |
| Zm00001d021995_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 51.99 | 66.98 |
| Os07t0589000-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 50.18 | 61.5 |
| TraesCS2D01G193400.1 | Wheat | cytosol, nucleus, plastid | 36.1 | 41.15 |
| HORVU4Hr1G013380.2 | Barley | nucleus | 33.57 | 40.79 |
| HORVU3Hr1G016320.1 | Barley | cytosol, nucleus, plastid | 28.88 | 28.37 |
| HORVU4Hr1G086700.1 | Barley | cytosol, nucleus | 28.88 | 26.67 |
| HORVU2Hr1G066080.1 | Barley | nucleus | 28.52 | 26.16 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G035160.1 | EnsemblPlantsGene:HORVU2Hr1G035160 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR004883 |
| InterPro:LOB | PANTHER:PTHR31304 | PANTHER:PTHR31304:SF1 | PFAM:PF03195 | PFscan:PS50891 | PFscan:PS51257 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI00029493E0 | UniProt:M0UKU4 | MapMan:15.5.24 | : |
Description
Predicted protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:M0UKU4]
Coordinates
chrchr2H:+:146872451..146875863
Molecular Weight (calculated)
29481.5 Da
IEP (calculated)
8.504
GRAVY (calculated)
0.161
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGSERAAVS TSTSGMSCNG CRVLRKGCND ACMLRPCLLW IEGADAQGHA TIFAAKFFGR AGLMSFLTAV PESQRPGTHA RTDWGSMLFF FFFFFLVRRF
101: ICCLWLMFVW CLLRIAAVFQ SLLYEAAGRT INPVGGAVGL LWAGSWHLCE AAVQTVLRGG AIRPLPELAG GVPEGGVGGS DLFASSSRRA VVGCSTYSMA
201: KRVTPRKTWA PEAASHHQEP SCDLGLFLTP GSAAAAEGER RARRAGTPSM SSDGSVTTTA GAGADGDKEP ELLNLFV
101: ICCLWLMFVW CLLRIAAVFQ SLLYEAAGRT INPVGGAVGL LWAGSWHLCE AAVQTVLRGG AIRPLPELAG GVPEGGVGGS DLFASSSRRA VVGCSTYSMA
201: KRVTPRKTWA PEAASHHQEP SCDLGLFLTP GSAAAAEGER RARRAGTPSM SSDGSVTTTA GAGADGDKEP ELLNLFV
001: MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPDSQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV
Arabidopsis Description
LBD37LOB domain-containing protein 37 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.