Factsheet for Zm00001d010751_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038717_P001	Maize	cytosol, mitochondrion, nucleus	85.94	84.06
Zm00001d010749_P001	Maize	plastid	64.86	71.73
Os01t0511000-01	Rice	cytosol, nucleus, plastid	35.78	60.22
HORVU3Hr1G016320.1	Barley	cytosol, nucleus, plastid	50.16	55.67
TraesCS3B01G106900.1	Wheat	cytosol, mitochondrion, nucleus	51.12	54.24
TraesCS3D01G091700.1	Wheat	cytosol, nucleus, plastid	50.8	53.54
TraesCS5A01G529400.1	Wheat	nucleus	44.41	51.87
Zm00001d029506_P001	Maize	cytosol, mitochondrion, nucleus, plastid	51.44	51.44
TraesCS5A01G529300.1	Wheat	cytosol, nucleus, plastid	46.33	50.17
AT1G68510.1	Thale cress	mitochondrion, nucleus	35.46	47.64
KRH45269	Soybean	nucleus	31.95	45.66
PGSC0003DMT400037711	Potato	mitochondrion	36.74	45.45
Solyc05g009320.2.1	Tomato	mitochondrion	36.74	45.28
KRG90816	Soybean	nucleus	32.27	45.09
VIT_01s0011g03530.t01	Wine grape	cytosol, nucleus, plastid	34.5	44.81
CDY38588	Canola	cytosol, mitochondrion, nucleus	33.87	44.17
Bra004315.1-P	Field mustard	mitochondrion	33.23	43.88
CDX96013	Canola	mitochondrion	33.23	43.88
Zm00001d040004_P001	Maize	mitochondrion	40.26	42.28
Zm00001d006739_P001	Maize	cytosol, mitochondrion, nucleus, plastid	26.84	39.62
Zm00001d029602_P001	Maize	cytosol, mitochondrion, nucleus, plastid	27.16	39.17
Zm00001d021995_P001	Maize	cytosol, mitochondrion, nucleus, plastid	26.84	39.07
Zm00001d033347_P001	Maize	mitochondrion, nucleus, plastid	27.16	33.86
Zm00001d029601_P003	Maize	cytosol	23.32	22.19

Protein Annotations

EMBL:EU963144	EnsemblPlants:Zm00001d010751_P001	EnsemblPlants:Zm00001d010751_T001	EnsemblPlantsGene:Zm00001d010751	EntrezGene:100282086	InterPro:IPR004883
InterPro:LOB	PANTHER:PTHR31304	PANTHER:PTHR31304:SF9	PFAM:PF03195	PFscan:PS50891	ProteinID:AIB05259.1
ProteinID:AQK94786.1	SEG:seg	UniParc:UPI000182C3EF	UniProt:B6TDS9	MapMan:15.5.24	:

Description

LBD-transcription factor 38Seed specific protein Bn15D17A

Coordinates

chr8:-:126849996..126850937

Molecular Weight (calculated)

33375.3 Da

IEP (calculated)

5.247

GRAVY (calculated)

-0.354

Length

313 amino acids

Sequence
(BLAST)

001: MRMSCNGCRV LRKGCGDACT IRPCLQWIEA PEAQANATVF LAKFYGRAGL LNLLAAAPDD GVRPAVFRSL LYEACGRIVN PVYGSVGLLW SRQWHRCADA
101: VEAVLRGDPV VQVDAGSDAA AAPPLLAGAR PPPPAAFDIR HVPRDPDATA ADLLRAGRKR FKRAGSSSNA SKAKPLPLEL EGKAGNNERA SPSPPPTQQR
201: EAEELQPVPM VVEPEHGEES AGSHDHHLQL QGWSEEDTDV EAASHVSQAE AEPPASSQSQ VLVADQEEEE VGLELTLGFE PVVRQQPRSS RCDKSGLSAA
301: SSLIGLRLQL PAA

Best Arabidopsis Sequence Match ( AT3G02550.1 )
(BLAST)

001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML

Arabidopsis Description

LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.