CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G68510.1	Thale cress	mitochondrion, nucleus	26.52	46.78
KRH45269	Soybean	nucleus	24.82	46.58
TraesCS5A01G529400.1	Wheat	nucleus	29.93	45.9
PGSC0003DMT400037711	Potato	mitochondrion	27.98	45.45
Bra004315.1-P	Field mustard	mitochondrion	26.03	45.15
CDX96013	Canola	mitochondrion	26.03	45.15
Solyc05g009320.2.1	Tomato	mitochondrion	27.74	44.88
VIT_01s0011g03530.t01	Wine grape	cytosol, nucleus, plastid	26.28	44.81
CDY38588	Canola	cytosol, mitochondrion, nucleus	26.03	44.58
EES02556	Sorghum	mitochondrion	31.87	44.11
TraesCS5A01G529300.1	Wheat	cytosol, nucleus, plastid	30.66	43.6
OQU92400	Sorghum	mitochondrion, nucleus, plastid	34.06	42.68
KRG90816	Soybean	nucleus	22.87	41.96
EER97470	Sorghum	cytosol, nucleus, plastid	20.68	39.72
KXG22356	Sorghum	plastid	31.63	39.16
EER92081	Sorghum	cytosol, mitochondrion, nucleus, plastid	21.9	38.3
KXG38039	Sorghum	mitochondrion, nucleus, plastid	19.95	33.2

Protein Annotations

EnsemblPlants:KXG22716	EnsemblPlantsGene:SORBI_3009G258300	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304	PANTHER:PTHR31304:SF9
PFAM:PF03195	PFscan:PS50891	ProteinID:KXG22716	ProteinID:KXG22716.1	SEG:seg	UniParc:UPI00081ABC2F
UniProt:A0A1B6PAI1	MapMan:15.5.24	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:59218285..59220197

Molecular Weight (calculated)

43237.6 Da

IEP (calculated)

7.297

GRAVY (calculated)

-0.339

Length

411 amino acids

Sequence
(BLAST)

001: MSVRPSGPFH CSHHTTPHHT TSSITCFVAI ISTTTYHHKA GQIMRLSCNG CRVLRKGCSD ACTIRPCLQW IKSSDAQANA TVFLAKFYGR AGLLNLIAAA
101: PNDALRPAVF RSLLYEACGR IVNPVYGAVG LLWSGTWHMC QAAVEAVLKG APIVQVSADD AAADAAAGPS IMNPPPPPAA AAAAAAAYDI RHVFPKSSSN
201: KHSAGGGAPP PPAAVDAAAQ SKDDKHTHRQ RLLHKVLVSK RTSSSSPPSK TKKSKTTTTT TTQNNKPHRA AASLATEHHN DDDDMLMMLV ADHSCDEEQQ
301: HAAVRLASNT NFNSKSRRAS SDDDCDDRHS ASASLDTEEA ASHVSQAAAE EAEPQQDDQL AEAEQQPPPM GLDLTLGLLT SSAPPPIGCR QGGGSSAAVD
401: EPAGVIGFRF L

Best Arabidopsis Sequence Match ( AT1G67100.1 )
(BLAST)

001: MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLNTGPDH LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWHLCQAAV
101: EAVMRGSPVT PIACDAAVTG QAPPFNNKLC DIRHVSSRDE NVKRRSRGAC KEERNVRSLS HESSLSHESP VSSEETTTEE PKTWIGLELT LGLEPLARGN
201: HVVVPMKKRK LERCGTSEDE DTCKIELGLV CSE

Arabidopsis Description

LBD40LOB domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW96]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.