CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
vacuole 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035149_P001	Maize	vacuole	76.67	78.36
Os05t0319100-00	Rice	extracellular	61.37	63.75
OQU79706	Sorghum	vacuole	31.37	51.28
EES09143	Sorghum	cytosol, plasma membrane, plastid, vacuole	42.75	51.05
KXG31170	Sorghum	golgi, vacuole	38.24	47.22
EES01213	Sorghum	golgi, vacuole	39.8	46.99
EES03598	Sorghum	endoplasmic reticulum, vacuole	37.84	41.87
OQU76322	Sorghum	golgi, vacuole	33.14	38.58
OQU90687	Sorghum	mitochondrion	37.45	34.85

Protein Annotations

MapMan:21.2.3.2.2	Gene3D:3.20.20.80	EntrezGene:8084147	UniProt:C5WY82	EnsemblPlants:EER93344	ProteinID:EER93344
ProteinID:EER93344.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0016798	GO:GO:0016985
GO:GO:0046355	InterPro:Glyco_hydro_5	InterPro:Glyco_hydro_5_CS	InterPro:Glycoside_hydrolase_SF	PFAM:PF00150	ScanProsite:PS00659
PANTHER:PTHR31451	PANTHER:PTHR31451:SF17	EnsemblPlantsGene:SORBI_3001G066900	SUPFAM:SSF51445	TMHMM:TMhelix	UniParc:UPI0001A82BD6
RefSeq:XP_002466346.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:5072701..5076586

Molecular Weight (calculated)

56540.7 Da

IEP (calculated)

6.704

GRAVY (calculated)

-0.248

Length

510 amino acids

Sequence
(BLAST)

001: MVKFATTMET VFKGRARART RVSLIHFFVR RCFAVAAAAI FLLTDGRHAH VDPAPLEILG GADDVDTLAH QRPNVNGASS SEAIDDEQWR MVKTRGNQFV
101: VGDRPFYLNG FNAYWLMILA VDPSTRGKVT EVFQQAAAVG LTVCRTWGFN DGGWRALQKS PSVYDEDVFK ALDFVVSEAR KYRIRLILSL INNWDGYGGK
201: AQYVKWARDD GGGGLINITS DDAFFSDQTV KGYFKNHVKN MLTRVNSYTS VMYKDDPTIL AWELMNEPRC TSDPTGNTLQ EWIQEMAFHV KSIDPDHLLE
301: VGAEGFYGPS SPARLPANPN AYAGEVGTDF IRNHRVLGVD FASVHIYPDT WMSGAATLEA QLKFVASWMQ AHIADGEGTL GGMPVVFTEF GASTKARSSA
401: AFNATTRDQF IQAVYGHLLN STRRGGAGAG ALLWQVFPEG TDYMDDGYGV VLPRAAATAR IMSAHSKKLA VFNSRCAWSC RWGCRRSEQQ SEDDDDDLPF
501: VSRMNRAEHI

Best Arabidopsis Sequence Match ( AT5G01930.1 )
(BLAST)

001: MKDQLGFRIV LCSAVFIILT QNRALADLDS ESHEVNSESV GEEQWEMVQR KGMQFTLNGQ PFYVNGFNTY WMMTLAADNS TRGKVTEVFQ QASAVGMTVG
101: RTWAFNDGQW RALQKSPSVY DEEVFKALDF VLSEARKYKI RLILSLVNNW DAYGGKAQYV KWGNASGLNL TSDDDFFTNP TLRNFYQSHV RTVLNRVNTF
201: TNITYKNDPT IFAWELMNEP RCPSDPSGDK LQSWIQEMAV FVKSLDAKHL VEIGLEGFYG PSAPARTRFN PNPYAAQVGT DFIRNNQVLG IDFASVHVYP
301: DSWISPAVSN SFLEFTSSWM QAHVEDAEMY LGMPVLFTEF GVSAHDPGFN TSFRDMMLNT VYKMTLNSTR KGGAGAGSLV WQVFPQGAEF MDDGYAVYLT
401: RAHTASKIIS LQSKRLAIFN SLCSWRCRWG CKKKNQTALD ALLSHDEL

Arabidopsis Description

MAN6Mannan endo-1,4-beta-mannosidase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZV3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.