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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 8
  • endoplasmic reticulum 5
  • vacuole 6
  • plasma membrane 5
  • golgi 5
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d013610_P001 Maize extracellular 87.95 89.55
Os03t0663400-02 Rice extracellular 59.38 59.91
EES16422 Sorghum extracellular 39.29 50.0
EES16421 Sorghum endoplasmic reticulum, extracellular 38.84 49.43
EES17460 Sorghum endoplasmic reticulum, extracellular 38.39 49.43
OQU79702 Sorghum endoplasmic reticulum, extracellular 37.5 48.28
EES17459 Sorghum endoplasmic reticulum, extracellular 37.05 47.98
EES17457 Sorghum endoplasmic reticulum, extracellular 37.5 47.73
OQU91235 Sorghum extracellular 49.11 47.62
EER99598 Sorghum endoplasmic reticulum, extracellular 47.32 45.49
EES01640 Sorghum extracellular 44.2 43.23
OQU79697 Sorghum extracellular, mitochondrion, plastid 33.93 40.43
OQU79698 Sorghum extracellular, plasma membrane 31.7 37.17
Protein Annotations
Gene3D:2.60.110.10MapMan:35.1EntrezGene:8056757UniProt:C5WQD8EnsemblPlants:EER93707ProteinID:EER93707
ProteinID:EER93707.1InterPro:IPR001938InterPro:IPR037176InterPro:Osmotin/thaumatin-like_sfPFAM:PF00314PIRSF:PIRSF002703
PRINTS:PR00347PFscan:PS51367PANTHER:PTHR31048PANTHER:PTHR31048:SF15SMART:SM00205EnsemblPlantsGene:SORBI_3001G145600
SUPFAM:SSF49870unigene:Sbi.11929SignalP:SignalP-noTMTMHMM:TMhelixInterPro:ThaumatinUniParc:UPI0001A82A97
RefSeq:XP_002466709.1SEG:seg::::
Description
hypothetical protein
Coordinates
chr1:-:11666320..11667578
Molecular Weight (calculated)
22775.0 Da
IEP (calculated)
5.127
GRAVY (calculated)
0.101
Length
224 amino acids
Sequence
(BLAST)
001: MAPGLRVLAL LLVAAAVAVA ADAVSIVVTN KCAYTVWPAA LPGGGTVLNT GDSWFIDVPA GTRNGRVWGR TGCGFIINGT LGQCQTGDCG GTLVCGKVGS
101: EPITLAEYSL AGTGGDQFDI SLVHGFNAPM SFLPSGGGGG ASRCARGAGP SCPVQEITFD CPSEQRRVAG CGNPCDGQSS SCGPNNGTEY FKKACPQTVT
201: YPRDTSNTIF TCPAGTSYEI TFCP
Best Arabidopsis Sequence Match ( AT4G11650.1 )
(BLAST)
001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN
Arabidopsis Description
OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.