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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 6
  • vacuole 6
  • plasma membrane 5
  • golgi 5
  • plastid 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular
Any Predictor:cytosol, plastid, secretory
BaCelLo:secretory
ChloroP:plastid
EpiLoc:vacuole
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:cytosol
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU79702 Sorghum endoplasmic reticulum, extracellular 78.74 78.74
EES17459 Sorghum endoplasmic reticulum, extracellular 74.14 74.57
Os12t0629600-00 Rice extracellular 74.14 72.88
Os12t0628600-01 Rice extracellular 74.14 72.88
Os12t0629300-00 Rice extracellular 71.26 71.26
EES17457 Sorghum endoplasmic reticulum, extracellular 71.84 71.02
Os12t0630100-01 Rice extracellular 74.14 70.88
Os12t0629700-01 Rice extracellular 72.41 70.39
TraesCSU01G146600.1 Wheat extracellular 66.67 65.91
TraesCS6B01G473800.1 Wheat extracellular 66.67 65.91
TraesCS4A01G498000.1 Wheat extracellular 66.67 65.91
TraesCS2A01G110300.1 Wheat extracellular 65.52 64.77
EES16422 Sorghum extracellular 64.37 63.64
EES16421 Sorghum endoplasmic reticulum, extracellular 64.37 63.64
OQU79697 Sorghum extracellular, mitochondrion, plastid 55.17 51.06
OQU79698 Sorghum extracellular, plasma membrane 48.28 43.98
OQU91235 Sorghum extracellular 52.87 39.83
EER93707 Sorghum extracellular 49.43 38.39
EER99598 Sorghum endoplasmic reticulum, extracellular 50.57 37.77
EES01640 Sorghum extracellular 49.43 37.55
Protein Annotations
Gene3D:2.60.110.10MapMan:35.1EntrezGene:8071512UniProt:C5YSV2EnsemblPlants:EES17460ProteinID:EES17460
ProteinID:EES17460.1InterPro:IPR001938InterPro:IPR037176InterPro:Osmotin/thaumatin-like_sfPFAM:PF00314PIRSF:PIRSF002703
PRINTS:PR00347ScanProsite:PS00316PFscan:PS51367PANTHER:PTHR31048PANTHER:PTHR31048:SF13SMART:SM00205
EnsemblPlantsGene:SORBI_3008G183300SUPFAM:SSF49870SignalP:SignalP-noTMTMHMM:TMhelixInterPro:ThaumatinInterPro:Thaumatin_CS
UniParc:UPI0001A88B13RefSeq:XP_002443622.1SEG:seg:::
Description
hypothetical protein
Coordinates
chr8:-:61677986..61679089
Molecular Weight (calculated)
17680.7 Da
IEP (calculated)
4.785
GRAVY (calculated)
0.129
Length
174 amino acids
Sequence
(BLAST)
001: MAASSTLLVL LAAALVAGAS ASTFTITNNC RYTVWPAATP VGGGTQLNPG GTWTITVPAG TSSGRVWGRT GCSFNGGSGS CQTGDCAGAL SCTLSGQPPL
101: TLAEFTLGTS GGNQDFYDIS VIDGYNLAMA FACSAGDRIV CTGSQCPQAY LFPDDNSKLH HCPGNSNYQV TFCP
Best Arabidopsis Sequence Match ( AT4G11650.1 )
(BLAST)
001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN
Arabidopsis Description
OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.