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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 6
  • vacuole 6
  • plasma membrane 5
  • golgi 5
  • cytosol 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, plastid, secretory
BaCelLo:secretory
EpiLoc:vacuole
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:cytosol
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
extracellular: 18986194
extracellular: 19226311
extracellular: 21255809
extracellular: 23159799
extracellular: 24083427
msms PMID: 23159799 doi
SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID: 21255809 doi
T Shinano, S Komatsu, T Yoshimura, S Tokutake, FJ Kong, T Watanabe, J Wasaki, M Osaki
National Agriculture and Food Research Organization, National Agricultural Research Center for Hokkaido Region, 1-Hitsujigaoka, Toyohira-ku, Sapporo 062-8555, Japan. shinano@affrc.go.jp
msms PMID: 24083427 doi
T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu
Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.
msms PMID: 19226311 doi
WK Cho, XY Chen, H Chu, Y Rim, S Kim, ST Kim, SW Kim, ZY Park, JY Kim
Division of Applied Life Science (BK21 Program), Graduate School, Environmental Biotechnology National Core Research Center, PMBBRC, Gyeongsang National University, Jinju, Korea.
msms PMID: 18986194 doi
YH Jung, SH Jeong, SH Kim, R Singh, JE Lee, YS Cho, GK Agrawal, R Rakwal, NS Jwa
Department of Molecular Biology, Sejong University, Gunja-dong, Seoul 143-747, South Korea.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os12t0629600-00 Rice extracellular 94.92 94.92
Os12t0629700-01 Rice extracellular 90.4 89.39
Os12t0630100-01 Rice extracellular 84.18 81.87
Os12t0629300-00 Rice extracellular 80.23 81.61
OQU79702 Sorghum endoplasmic reticulum, extracellular 76.84 78.16
Zm00001d031157_P001 Maize extracellular 77.4 77.4
Zm00001d031155_P001 Maize extracellular 77.4 77.4
Zm00001d031158_P001 Maize extracellular 73.45 74.71
EES17460 Sorghum endoplasmic reticulum, extracellular 72.88 74.14
EES17459 Sorghum endoplasmic reticulum, extracellular 71.19 72.83
EES17457 Sorghum endoplasmic reticulum, extracellular 71.19 71.59
TraesCS4A01G498000.1 Wheat extracellular 66.67 67.05
TraesCSU01G146600.1 Wheat extracellular 66.67 67.05
TraesCS6B01G473800.1 Wheat extracellular 66.1 66.48
TraesCS2A01G110300.1 Wheat extracellular 65.54 65.91
Os03t0663500-00 Rice extracellular 56.5 45.66
Os03t0663400-02 Rice extracellular 48.02 38.29
Os12t0630200-01 Rice extracellular 51.41 38.24
Os12t0630500-01 Rice extracellular 55.37 37.98
Os03t0661600-01 Rice extracellular 57.06 35.94
Protein Annotations
Gene3D:2.60.110.10MapMan:35.1EntrezGene:4352852EntrezGene:4352855ProteinID:ABA99520.1ProteinID:ABA99918.1
EMBL:AK099946EMBL:AK241419ProteinID:BAF30350.1ProteinID:BAF30353.1ProteinID:BAT18199.1ProteinID:BAT18202.1
GO:GO:0005575GO:GO:0005576InterPro:IPR001938InterPro:IPR037176EnsemblPlantsGene:Os12g0628600EnsemblPlants:Os12t0628600-01
InterPro:Osmotin/thaumatin-like_sfUniProt:P31110PFAM:PF00314PIRSF:PIRSF002703PRINTS:PR00347ScanProsite:PS00316
PFscan:PS51367PANTHER:PTHR31048PANTHER:PTHR31048:SF13SMART:SM00205SUPFAM:SSF49870SignalP:SignalP-noTM
TMHMM:TMhelixInterPro:ThaumatinInterPro:Thaumatin_CSUniParc:UPI000013704AEMBL:X68197RefSeq:XP_015618555.1
RefSeq:XP_015618577.1SEG:seg::::
Description
PATHOGENESIS-RELATED GENE 5Similar to Thaumatin-like pathogenesis-related protein 3 precursor. (Os12t0628600-01)
Coordinates
chr12:-:26913087..26913851
Molecular Weight (calculated)
17993.0 Da
IEP (calculated)
4.910
GRAVY (calculated)
0.185
Length
177 amino acids
Sequence
(BLAST)
001: MASPATSSAV LVVVLVATLA AGGANAATFT ITNRCSFTVW PAATPVGGGV QLSPGQTWTI NVPAGTSSGR VWGRTGCSFD GSGRGSCATG DCAGALSCTL
101: SGQKPLTLAE FTIGGSQDFY DLSVIDGYNV AMSFSCSSGV TVTCRDSRCP DAYLFPEDNT KTHACSGNSN YQVVFCP
Best Arabidopsis Sequence Match ( AT4G11650.1 )
(BLAST)
001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN
Arabidopsis Description
OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.