Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 5
- cytosol 1
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
18986194
extracellular: 19226311 extracellular: 21255809 extracellular: 23159799 extracellular: 24083427 |
msms PMID:
23159799
doi
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID:
21255809
doi
National Agriculture and Food Research Organization, National Agricultural Research Center for Hokkaido Region, 1-Hitsujigaoka, Toyohira-ku, Sapporo 062-8555, Japan. shinano@affrc.go.jp
msms PMID:
24083427
doi
Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Os12t0629600-00 | Rice | extracellular | 94.92 | 94.92 |
Os12t0629700-01 | Rice | extracellular | 90.4 | 89.39 |
Os12t0630100-01 | Rice | extracellular | 84.18 | 81.87 |
Os12t0629300-00 | Rice | extracellular | 80.23 | 81.61 |
OQU79702 | Sorghum | endoplasmic reticulum, extracellular | 76.84 | 78.16 |
Zm00001d031157_P001 | Maize | extracellular | 77.4 | 77.4 |
Zm00001d031155_P001 | Maize | extracellular | 77.4 | 77.4 |
Zm00001d031158_P001 | Maize | extracellular | 73.45 | 74.71 |
EES17460 | Sorghum | endoplasmic reticulum, extracellular | 72.88 | 74.14 |
EES17459 | Sorghum | endoplasmic reticulum, extracellular | 71.19 | 72.83 |
EES17457 | Sorghum | endoplasmic reticulum, extracellular | 71.19 | 71.59 |
TraesCS4A01G498000.1 | Wheat | extracellular | 66.67 | 67.05 |
TraesCSU01G146600.1 | Wheat | extracellular | 66.67 | 67.05 |
TraesCS6B01G473800.1 | Wheat | extracellular | 66.1 | 66.48 |
TraesCS2A01G110300.1 | Wheat | extracellular | 65.54 | 65.91 |
Os03t0663500-00 | Rice | extracellular | 56.5 | 45.66 |
Os03t0663400-02 | Rice | extracellular | 48.02 | 38.29 |
Os12t0630200-01 | Rice | extracellular | 51.41 | 38.24 |
Os12t0630500-01 | Rice | extracellular | 55.37 | 37.98 |
Os03t0661600-01 | Rice | extracellular | 57.06 | 35.94 |
Protein Annotations
Gene3D:2.60.110.10 | MapMan:35.1 | EntrezGene:4352852 | EntrezGene:4352855 | ProteinID:ABA99520.1 | ProteinID:ABA99918.1 |
EMBL:AK099946 | EMBL:AK241419 | ProteinID:BAF30350.1 | ProteinID:BAF30353.1 | ProteinID:BAT18199.1 | ProteinID:BAT18202.1 |
GO:GO:0005575 | GO:GO:0005576 | InterPro:IPR001938 | InterPro:IPR037176 | EnsemblPlantsGene:Os12g0628600 | EnsemblPlants:Os12t0628600-01 |
InterPro:Osmotin/thaumatin-like_sf | UniProt:P31110 | PFAM:PF00314 | PIRSF:PIRSF002703 | PRINTS:PR00347 | ScanProsite:PS00316 |
PFscan:PS51367 | PANTHER:PTHR31048 | PANTHER:PTHR31048:SF13 | SMART:SM00205 | SUPFAM:SSF49870 | SignalP:SignalP-noTM |
TMHMM:TMhelix | InterPro:Thaumatin | InterPro:Thaumatin_CS | UniParc:UPI000013704A | EMBL:X68197 | RefSeq:XP_015618555.1 |
RefSeq:XP_015618577.1 | SEG:seg | : | : | : | : |
Description
PATHOGENESIS-RELATED GENE 5Similar to Thaumatin-like pathogenesis-related protein 3 precursor. (Os12t0628600-01)
Coordinates
chr12:-:26913087..26913851
Molecular Weight (calculated)
17993.0 Da
IEP (calculated)
4.910
GRAVY (calculated)
0.185
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPATSSAV LVVVLVATLA AGGANAATFT ITNRCSFTVW PAATPVGGGV QLSPGQTWTI NVPAGTSSGR VWGRTGCSFD GSGRGSCATG DCAGALSCTL
101: SGQKPLTLAE FTIGGSQDFY DLSVIDGYNV AMSFSCSSGV TVTCRDSRCP DAYLFPEDNT KTHACSGNSN YQVVFCP
101: SGQKPLTLAE FTIGGSQDFY DLSVIDGYNV AMSFSCSSGV TVTCRDSRCP DAYLFPEDNT KTHACSGNSN YQVVFCP
001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN
Arabidopsis Description
OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.