Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 5
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
23159799
extracellular: 24083427 extracellular: 25047395 extracellular: 26072143 plastid: 27992503 extracellular: 28232208 |
msms PMID:
26072143
doi
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.
msms PMID:
25047395
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.
msms PMID:
23159799
doi
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID:
24083427
doi
Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G015500.1 | Wheat | golgi | 69.75 | 73.78 |
| TraesCS5A01G017900.1 | Wheat | golgi | 69.33 | 73.33 |
| TraesCS7B01G417700.1 | Wheat | extracellular | 68.91 | 72.89 |
| TraesCS5B01G015700.1 | Wheat | golgi | 68.91 | 69.79 |
| TraesCS5A01G018000.1 | Wheat | extracellular | 68.91 | 69.79 |
| HORVU5Hr1G051970.4 | Barley | extracellular | 68.49 | 66.53 |
| Os12t0630500-01 | Rice | extracellular | 70.59 | 65.12 |
| Zm00001d043121_P001 | Maize | extracellular | 59.24 | 64.09 |
| TraesCS5B01G016100.1 | Wheat | unclear | 66.81 | 61.87 |
| EES01640 | Sorghum | extracellular | 58.4 | 60.7 |
| TraesCS5B01G015800.1 | Wheat | mitochondrion | 41.6 | 55.0 |
| TraesCS5B01G016000.1 | Wheat | extracellular, unclear | 71.01 | 54.52 |
| Os03t0663500-00 | Rice | extracellular | 50.0 | 54.34 |
| HORVU5Hr1G005180.1 | Barley | extracellular | 68.49 | 54.33 |
| Os12t0630100-01 | Rice | extracellular | 40.34 | 52.75 |
| Os12t0629700-01 | Rice | extracellular | 39.08 | 51.96 |
| Os03t0663400-02 | Rice | extracellular | 48.32 | 51.8 |
| Os12t0629600-00 | Rice | extracellular | 38.24 | 51.41 |
| Os12t0628600-01 | Rice | extracellular | 38.24 | 51.41 |
| Os12t0629300-00 | Rice | extracellular | 35.29 | 48.28 |
| Os03t0661600-01 | Rice | extracellular | 52.94 | 44.84 |
| HORVU5Hr1G005310.1 | Barley | cytosol | 23.53 | 42.11 |
| HORVU5Hr1G005510.1 | Barley | extracellular, mitochondrion, plastid | 13.45 | 40.51 |
| HORVU5Hr1G051950.1 | Barley | extracellular | 28.99 | 36.9 |
Protein Annotations
| Gene3D:2.60.110.10 | MapMan:35.1 | EntrezGene:4352857 | ProteinID:ABA99920.1 | ProteinID:BAF30355.1 | ProteinID:BAT18204.1 |
| ProteinID:EAZ21306.1 | InterPro:IPR001938 | InterPro:IPR037176 | EnsemblPlantsGene:Os12g0630200 | EnsemblPlants:Os12t0630200-01 | InterPro:Osmotin/thaumatin-like_sf |
| PFAM:PF00314 | PIRSF:PIRSF002703 | PRINTS:PR00347 | PFscan:PS51367 | PANTHER:PTHR31048 | PANTHER:PTHR31048:SF42 |
| UniProt:Q2QLS7 | SMART:SM00205 | SUPFAM:SSF49870 | SignalP:SignalP-noTM | TMHMM:TMhelix | InterPro:Thaumatin |
| UniParc:UPI0000680B9D | RefSeq:XP_015618983.1 | SEG:seg | : | : | : |
Description
Thaumatin, pathogenesis-related family protein. (Os12t0630200-01)
Coordinates
chr12:+:26960487..26961383
Molecular Weight (calculated)
25009.7 Da
IEP (calculated)
8.113
GRAVY (calculated)
-0.079
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MANTRVFVLL LLAVAVAVVY SADAATITVV NRCRYTVWPG ALPGGGVRLD PGKSWTLNVA AGTKAARIWP RTGCDFDGAG RGRCLTGDCR NALSCAVSGA
101: PPTTLAEYTL GTPGAAGGDA TDYFDLSLID GFNVPMSFQP TSNAARCGAR RRGPSCGVDI TAQCLPELKV AGGCDSACGK FGGDAYCCRG KYEHECPPTK
201: YSKFFKDKCP DAYSYAKDDR SSTFTCPAGT NYQIVMCP
101: PPTTLAEYTL GTPGAAGGDA TDYFDLSLID GFNVPMSFQP TSNAARCGAR RRGPSCGVDI TAQCLPELKV AGGCDSACGK FGGDAYCCRG KYEHECPPTK
201: YSKFFKDKCP DAYSYAKDDR SSTFTCPAGT NYQIVMCP
001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN
Arabidopsis Description
OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.