Factsheet for HORVU5Hr1G051970.4

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
mitochondrion 2
endoplasmic reticulum 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	endoplasmic reticulum, extracellular, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
TargetP:	mitochondrion
YLoc:	extracellular

extracellular: 26928395

msms PMID: 26928395 doi

A Sultan, B Andersen, B Svensson, C Finnie

Agricultural and Environmental Proteomics, Department of Systems Biology, Technical University of Denmark , Søltofts Plads, Building 224, DK-2800 Kgs. Lyngby, Denmark., Enzyme and Protein Chemistry, Department of Systems Biology, Technical University of Denmark , Elektrovej, Building 375, DK-2800 Kgs. Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G017900.1	Wheat	golgi	86.12	93.78
TraesCS5B01G015500.1	Wheat	golgi	85.31	92.89
TraesCS7B01G417700.1	Wheat	extracellular	84.49	92.0
HORVU5Hr1G051960.1	Barley	cytosol	22.45	80.88
Os12t0630200-01	Rice	extracellular	66.53	68.49
HORVU5Hr1G005180.1	Barley	extracellular	81.63	66.67
Zm00001d043121_P001	Maize	extracellular	59.18	65.91
EES01640	Sorghum	extracellular	60.41	64.63
HORVU5Hr1G005190.1	Barley	extracellular	55.92	60.62
HORVU4Hr1G002640.1	Barley	cytosol	23.67	59.18
HORVU5Hr1G005240.1	Barley	plastid	59.59	59.11
HORVU4Hr1G002650.2	Barley	extracellular	53.06	50.98
HORVU5Hr1G005510.1	Barley	extracellular, mitochondrion, plastid	16.33	50.63
HORVU5Hr1G005300.1	Barley	extracellular	35.1	50.29
HORVU5Hr1G005310.1	Barley	cytosol	26.94	49.62
HORVU7Hr1G122120.1	Barley	extracellular	33.06	46.82
HORVU5Hr1G051950.1	Barley	extracellular	35.51	46.52
HORVU3Hr1G056430.1	Barley	endoplasmic reticulum, extracellular	32.65	43.48
HORVU5Hr1G005290.1	Barley	extracellular, plastid	35.92	38.43

Protein Annotations

EMBL:AK355059	EnsemblPlants:HORVU5Hr1G051970.4	EnsemblPlantsGene:HORVU5Hr1G051970	Gene3D:2.60.110.10	InterPro:IPR001938	InterPro:IPR037176
InterPro:Osmotin/thaumatin-like_sf	InterPro:Thaumatin	InterPro:Thaumatin_CS	PANTHER:PTHR31048	PANTHER:PTHR31048:SF42	PFAM:PF00314
PFscan:PS51367	PIRSF:PIRSF002703	PRINTS:PR00347	ScanProsite:PS00316	SEG:seg	SignalP:SignalP-noTM
SMART:SM00205	SUPFAM:SSF49870	UniParc:UPI000B4723C4	UniProt:A0A287R7D5	MapMan:35.1	:

Description

No Description!

Coordinates

chrchr5H:+:406435574..406436533

Molecular Weight (calculated)

25611.3 Da

IEP (calculated)

7.864

GRAVY (calculated)

-0.076

Length

245 amino acids

Sequence
(BLAST)

001: SPPLHARTHT TITIHKSSMA SSHVVSLLAG LLLAALAAST DAATITVVNR CSYTVWPGAL PGGGVRLDPG QSWALNMPAG TAGARVWPRT GCTFDGSGRG
101: RCITGDCGGA LACRVSGQQP TTLAEYTLGQ GANKDFFDLS VIDGFNVPMS FEPVGASCRA ARCATDITKE CLKELQVPGG CASACGKFGG DTYCCRGQFE
201: HNCPPTNYSK FFKGKCPDAY SYAKDDQTST FTCPAGTNYQ IVLCP

Best Arabidopsis Sequence Match ( AT1G75030.1 )
(BLAST)

001: MAKISSIHIL FFVFITSGIA DSATVFTLQN SCAYTVWPGT LSGNSITLGD GGFPLTPGAS VQLTAPTGWS GRFWARTGCN FDASGHGTCV TGDCGGVLKC
101: TGGGVPPATL AEFTVGSSNA GMDFYDVSLV DGYNVKMGIK PQGGFGNCKY AGCVSDINEI CPSELRIMDP NSGSVAACKS ACAAFSSPEF CCTGAHATPQ
201: TCSPTYYSSM FKNACPSAYS YAYDDASSTF TCTGSNYLIT FCPTQS

Arabidopsis Description

ATLP-3At1g75030 [Source:UniProtKB/TrEMBL;Acc:Q9C9P9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.