Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
26928395
|
msms PMID:
26928395
doi
Agricultural and Environmental Proteomics, Department of Systems Biology, Technical University of Denmark , Søltofts Plads, Building 224, DK-2800 Kgs. Lyngby, Denmark., Enzyme and Protein Chemistry, Department of Systems Biology, Technical University of Denmark , Elektrovej, Building 375, DK-2800 Kgs. Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G018200.1 | Wheat | endoplasmic reticulum, extracellular | 67.69 | 90.64 |
| HORVU5Hr1G005300.1 | Barley | extracellular | 60.26 | 80.7 |
| HORVU7Hr1G122120.1 | Barley | extracellular | 44.54 | 58.96 |
| HORVU3Hr1G056430.1 | Barley | endoplasmic reticulum, extracellular | 42.79 | 53.26 |
| HORVU5Hr1G005190.1 | Barley | extracellular | 37.12 | 37.61 |
| HORVU5Hr1G051970.4 | Barley | extracellular | 38.43 | 35.92 |
| HORVU5Hr1G005240.1 | Barley | plastid | 36.68 | 34.01 |
| HORVU4Hr1G002650.2 | Barley | extracellular | 35.81 | 32.16 |
| HORVU5Hr1G005510.1 | Barley | extracellular, mitochondrion, plastid | 10.48 | 30.38 |
| HORVU5Hr1G005180.1 | Barley | extracellular | 37.12 | 28.33 |
| HORVU5Hr1G051950.1 | Barley | extracellular | 20.52 | 25.13 |
| HORVU4Hr1G002640.1 | Barley | cytosol | 8.3 | 19.39 |
| HORVU5Hr1G005310.1 | Barley | cytosol | 5.24 | 9.02 |
| HORVU5Hr1G051960.1 | Barley | cytosol | 1.31 | 4.41 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G005290.1 | EnsemblPlantsGene:HORVU5Hr1G005290 | Gene3D:2.60.110.10 | InterPro:IPR001938 | InterPro:IPR037176 | InterPro:Osmotin/thaumatin-like_sf |
| InterPro:Thaumatin | PANTHER:PTHR31048 | PANTHER:PTHR31048:SF13 | PFAM:PF00314 | PFscan:PS51367 | PIRSF:PIRSF002703 |
| PRINTS:PR00347 | SEG:seg | SMART:SM00205 | SUPFAM:SSF49870 | UniParc:UPI000B477609 | UniProt:A0A287Q803 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr5H:+:8764295..8765150
Molecular Weight (calculated)
24326.5 Da
IEP (calculated)
6.848
GRAVY (calculated)
-0.241
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: QIFPSQHWPA CKLSSLPILK YIPSSDPSPK LQSTINEHVL ANPLNQQYHS NQASQETTMA ASSSALIILL AAALTAGASA RSFSITNRCS FTVWPAATPV
101: GGGRQLNGGE TWNLDIPDGT SSARIWGRTD CSFNGNSGRC GTGDCGGALS CTLSGQPPLT LAEFTLGGGT DFYDISVIDG YNLPMDFSCS TGVNIQCRDR
201: NCPDAYHTPP EPKTKACSGN RRFNIVFCP
101: GGGRQLNGGE TWNLDIPDGT SSARIWGRTD CSFNGNSGRC GTGDCGGALS CTLSGQPPLT LAEFTLGGGT DFYDISVIDG YNLPMDFSCS TGVNIQCRDR
201: NCPDAYHTPP EPKTKACSGN RRFNIVFCP
001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN
Arabidopsis Description
OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.