Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
- golgi 2
- mitochondrion 1
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
26928395
|
msms PMID:
26928395
doi
Agricultural and Environmental Proteomics, Department of Systems Biology, Technical University of Denmark , Søltofts Plads, Building 224, DK-2800 Kgs. Lyngby, Denmark., Enzyme and Protein Chemistry, Department of Systems Biology, Technical University of Denmark , Elektrovej, Building 375, DK-2800 Kgs. Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G296300.1 | Wheat | extracellular, unclear | 83.53 | 93.01 |
| TraesCS4D01G015800.1 | Wheat | unclear | 83.92 | 91.85 |
| TraesCS4B01G017300.1 | Wheat | cytosol, mitochondrion | 61.57 | 90.75 |
| HORVU4Hr1G002640.1 | Barley | cytosol | 29.8 | 77.55 |
| OQU91235 | Sorghum | extracellular | 69.8 | 77.06 |
| Zm00001d033455_P001 | Maize | extracellular | 67.84 | 75.22 |
| VIT_02s0025g04250.t01 | Wine grape | extracellular | 56.47 | 64.0 |
| GSMUA_Achr6P31470_001 | Banana | endoplasmic reticulum, extracellular | 46.27 | 63.78 |
| VIT_02s0025g04270.t01 | Wine grape | extracellular | 56.08 | 63.56 |
| VIT_02s0025g04230.t01 | Wine grape | extracellular | 55.69 | 63.11 |
| VIT_02s0025g04260.t01 | Wine grape | extracellular | 42.75 | 62.64 |
| Os03t0661600-01 | Rice | extracellular | 67.45 | 61.21 |
| GSMUA_Achr6P31500_001 | Banana | endoplasmic reticulum, extracellular | 32.55 | 61.03 |
| VIT_02s0025g04310.t01 | Wine grape | extracellular | 53.33 | 60.44 |
| VIT_02s0025g04300.t01 | Wine grape | extracellular | 53.33 | 60.44 |
| KRH59832 | Soybean | extracellular | 52.55 | 60.36 |
| KRH59826 | Soybean | extracellular | 52.55 | 59.82 |
| VIT_02s0025g04290.t01 | Wine grape | extracellular | 50.98 | 58.04 |
| VIT_02s0025g04280.t01 | Wine grape | extracellular | 52.16 | 56.12 |
| HORVU5Hr1G005190.1 | Barley | extracellular | 48.63 | 54.87 |
| KRH77506 | Soybean | extracellular | 47.84 | 54.71 |
| KRH27960 | Soybean | endoplasmic reticulum, extracellular | 47.06 | 53.57 |
| HORVU5Hr1G051970.4 | Barley | extracellular | 50.98 | 53.06 |
| HORVU5Hr1G005240.1 | Barley | plastid | 51.37 | 53.04 |
| HORVU7Hr1G122120.1 | Barley | extracellular | 35.29 | 52.02 |
| HORVU5Hr1G005300.1 | Barley | extracellular | 32.94 | 49.12 |
| HORVU3Hr1G056430.1 | Barley | endoplasmic reticulum, extracellular | 31.76 | 44.02 |
| HORVU5Hr1G051960.1 | Barley | cytosol | 10.98 | 41.18 |
| HORVU5Hr1G005180.1 | Barley | extracellular | 47.45 | 40.33 |
| HORVU5Hr1G005290.1 | Barley | extracellular, plastid | 32.16 | 35.81 |
| HORVU5Hr1G005310.1 | Barley | cytosol | 16.47 | 31.58 |
| HORVU5Hr1G005510.1 | Barley | extracellular, mitochondrion, plastid | 8.63 | 27.85 |
| HORVU5Hr1G051950.1 | Barley | extracellular | 19.61 | 26.74 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G002650.2 | EnsemblPlantsGene:HORVU4Hr1G002650 | Gene3D:2.60.110.10 | InterPro:IPR001938 | InterPro:IPR037176 | InterPro:Osmotin/thaumatin-like_sf |
| InterPro:Thaumatin | InterPro:Thaumatin_CS | PANTHER:PTHR31048 | PANTHER:PTHR31048:SF47 | PFAM:PF00314 | PFscan:PS51367 |
| PIRSF:PIRSF002703 | PRINTS:PR00347 | ScanProsite:PS00316 | SEG:seg | SMART:SM00205 | SUPFAM:SSF49870 |
| TMHMM:TMhelix | UniParc:UPI0002959049 | UniProt:M0W099 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chrchr4H:+:5073727..5074962
Molecular Weight (calculated)
26822.8 Da
IEP (calculated)
7.825
GRAVY (calculated)
-0.062
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MPFFLTTGTL KLYYVQGRGE NTMASLPTSS VLLPILLLVL VAATADAATF TVINKCQYTV WAAAVPAGGG QKLDAGQTWS INVPAGTTSG RVWARTGCSF
101: DGAGNGRCQT GDCGGKLRCT QYGQAPNTLA EFGLNKYMGQ DFFDISLIDG YNVPMSFVPA PGSPGCPKGG PRCPKVITPA CPNELRAAGG CNNACTVFKE
201: DRYCCTGSAA NSCGPTDYSR FFKGQCSDAY SYPKDDATSI FTCPGGTNYQ VIFCP
101: DGAGNGRCQT GDCGGKLRCT QYGQAPNTLA EFGLNKYMGQ DFFDISLIDG YNVPMSFVPA PGSPGCPKGG PRCPKVITPA CPNELRAAGG CNNACTVFKE
201: DRYCCTGSAA NSCGPTDYSR FFKGQCSDAY SYPKDDATSI FTCPGGTNYQ VIFCP
001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN
Arabidopsis Description
OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.