CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 7
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 22945350
nucleus: 28499913

msms PMID: 22945350 doi

C Liao, F Hochholdinger, C Li

Key Laboratory of Plant-Soil Interactions, Ministry of Education, Center for Resources, Environment and Food Security, China Agricultural University, Beijing, China.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59826	Soybean	extracellular	87.84	87.05
VIT_02s0025g04260.t01	Wine grape	extracellular	62.16	79.31
VIT_02s0025g04270.t01	Wine grape	extracellular	78.83	77.78
VIT_02s0025g04230.t01	Wine grape	extracellular	78.38	77.33
VIT_02s0025g04250.t01	Wine grape	extracellular	77.03	76.0
VIT_02s0025g04310.t01	Wine grape	extracellular	76.58	75.56
VIT_02s0025g04300.t01	Wine grape	extracellular	74.77	73.78
GSMUA_Achr6P31470_001	Banana	endoplasmic reticulum, extracellular	60.81	72.97
VIT_02s0025g04280.t01	Wine grape	extracellular	75.68	70.89
Os03t0663500-00	Rice	extracellular	68.92	69.86
GSMUA_Achr6P31500_001	Banana	endoplasmic reticulum, extracellular	42.79	69.85
PGSC0003DMT400010892	Potato	cytosol	40.54	69.77
VIT_02s0025g04290.t01	Wine grape	extracellular	68.92	68.3
GSMUA_Achr4P31970_001	Banana	extracellular	53.15	66.67
PGSC0003DMT400010886	Potato	cytosol	68.02	66.52
GSMUA_Achr7P16510_001	Banana	endoplasmic reticulum, extracellular	54.5	66.48
HORVU4Hr1G002640.1	Barley	cytosol	29.28	66.33
Solyc12g056390.1.1	Tomato	extracellular	66.67	65.2
OQU91235	Sorghum	extracellular	67.57	64.94
Zm00001d033455_P001	Maize	extracellular	67.12	64.78
PGSC0003DMT400010887	Potato	cytosol, mitochondrion, nucleus	49.1	64.12
KRH77506	Soybean	extracellular	63.06	62.78
KRH27960	Soybean	endoplasmic reticulum, extracellular	63.06	62.5
TraesCS4B01G017300.1	Wheat	cytosol, mitochondrion	48.65	62.43
TraesCS4A01G296400.1	Wheat	cytosol	28.38	62.38
Zm00001d021901_P001	Maize	extracellular	62.61	61.23
TraesCS4D01G015600.1	Wheat	extracellular	64.41	60.85
EER99598	Sorghum	endoplasmic reticulum, extracellular	63.06	60.09
TraesCS4A01G296300.1	Wheat	extracellular, unclear	61.71	59.83
PGSC0003DMT400010891	Potato	cytosol	58.11	59.72
Bra013674.1-P	Field mustard	extracellular	61.71	59.31
CDY41250	Canola	extracellular	61.26	58.87
CDY53136	Canola	extracellular	61.26	58.87
TraesCS4D01G015800.1	Wheat	unclear	61.71	58.8
KRH77507	Soybean	extracellular	64.86	57.83
Solyc12g056360.1.1	Tomato	extracellular	59.46	57.64
Solyc12g056380.1.1	Tomato	extracellular	56.76	55.02
GSMUA_Achr9P26190_001	Banana	extracellular	50.0	54.41
HORVU4Hr1G002650.2	Barley	extracellular	60.36	52.55
PGSC0003DMT400010888	Potato	extracellular	33.33	52.48
Os03t0661600-01	Rice	extracellular	64.41	50.89
Solyc12g056370.1.1	Tomato	cytosol	40.54	38.46
PGSC0003DMT400010890	Potato	extracellular	68.02	35.45

Protein Annotations

EntrezGene:100301882	Gene3D:2.60.110.10	MapMan:35.1	EMBL:ACUP02003342	EnsemblPlantsGene:GLYMA_05G204800	UniProt:I1K6M2
InterPro:IPR001938	InterPro:IPR037176	EnsemblPlants:KRH59832	ProteinID:KRH59832	ProteinID:KRH59832.1	InterPro:Osmotin/thaumatin-like_sf
PFAM:PF00314	PIRSF:PIRSF002703	PRINTS:PR00347	ScanProsite:PS00316	PFscan:PS51367	PANTHER:PTHR31048
PANTHER:PTHR31048:SF36	SMART:SM00205	SUPFAM:SSF49870	SignalP:SignalP-noTM	InterPro:Thaumatin	InterPro:Thaumatin_CS
UniParc:UPI0001BA5DAD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:38815521..38816378

Molecular Weight (calculated)

23813.9 Da

IEP (calculated)

7.921

GRAVY (calculated)

-0.258

Length

222 amino acids

Sequence
(BLAST)

001: MTLTKALFFV TALCCTSAAY AARFDITNRC SYPVWAAAVP GGGRRLNSGQ SWALDVPAGT KGARVWARTG CNFDGSGRGG CQTGDCGGVL DCKAYGTPPN
101: TLAEYALNQF SNLDFFDISL VDGFNVPMDF SPTSNGCTRG IRCTADINGQ CPSQLKTQGG CNNPCTVFKT DQYCCNSGSC VPTDYSRFFK QRCPDAYSYP
201: KDDPTSTFTC KGGTNYRVVF CP

Best Arabidopsis Sequence Match ( AT4G11650.1 )
(BLAST)

001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN

Arabidopsis Description

OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.