Factsheet for VIT_02s0025g04310.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 19822229
extracellular: 23391302

msms PMID: 23391302 doi

B Delaunois, T Colby, N Belloy, A Conreux, A Harzen, F Baillieul, C Clément, J Schmidt, P Jeandet, S Cordelier

Université de Reims Champagne-Ardenne, UFR Sciences Exactes et Naturelles, Unité de Recherche Vigne et Vins de Champagne - EA 4707, Laboratoire de Stress, Défenses et Reproduction des Plantes, B,P, 1039, Reims, cedex 02, 51687, France.

msms PMID: 19822229 doi

MJ Martinez-Esteso, S Sellés-Marchart, JC Vera-Urbina, MA Pedreño, R Bru-Martinez

Department of Agrochemistry and Biochemistry, University of Alicante, Spain.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g04300.t01	Wine grape	extracellular	95.56	95.56
VIT_02s0025g04280.t01	Wine grape	extracellular	90.67	86.08
VIT_02s0025g04260.t01	Wine grape	extracellular	64.0	82.76
VIT_02s0025g04230.t01	Wine grape	extracellular	82.67	82.67
VIT_02s0025g04270.t01	Wine grape	extracellular	82.22	82.22
VIT_02s0025g04250.t01	Wine grape	extracellular	79.56	79.56
VIT_02s0025g04290.t01	Wine grape	extracellular	77.33	77.68
KRH59832	Soybean	extracellular	75.56	76.58
GSMUA_Achr6P31470_001	Banana	endoplasmic reticulum, extracellular	60.44	73.51
KRH59826	Soybean	extracellular	72.0	72.32
GSMUA_Achr7P16510_001	Banana	endoplasmic reticulum, extracellular	57.78	71.43
GSMUA_Achr6P31500_001	Banana	endoplasmic reticulum, extracellular	43.11	71.32
GSMUA_Achr4P31970_001	Banana	extracellular	54.22	68.93
VIT_02s0025g04320.t01	Wine grape	cytosol	28.44	68.09
Os03t0663500-00	Rice	extracellular	66.22	68.04
VIT_02s0025g04330.t01	Wine grape	extracellular	65.78	66.67
OQU91235	Sorghum	extracellular	67.56	65.8
Zm00001d033455_P001	Maize	extracellular	65.33	63.91
KRH77506	Soybean	extracellular	62.22	62.78
KRH27960	Soybean	endoplasmic reticulum, extracellular	61.78	62.05
HORVU4Hr1G002640.1	Barley	cytosol	26.67	61.22
Zm00001d021901_P001	Maize	extracellular	61.33	60.79
TraesCS4D01G015800.1	Wheat	unclear	62.67	60.52
TraesCS4D01G015600.1	Wheat	extracellular	63.11	60.43
TraesCS4B01G017300.1	Wheat	cytosol, mitochondrion	46.22	60.12
TraesCS4A01G296300.1	Wheat	extracellular, unclear	60.44	59.39
EER99598	Sorghum	endoplasmic reticulum, extracellular	60.89	58.8
VIT_02s0025g04340.t01	Wine grape	endoplasmic reticulum, extracellular, plastid	67.56	58.02
TraesCS4A01G296400.1	Wheat	cytosol	25.78	57.43
GSMUA_Achr9P26190_001	Banana	extracellular	52.0	57.35
HORVU4Hr1G002650.2	Barley	extracellular	60.44	53.33
Os03t0661600-01	Rice	extracellular	64.44	51.6

Protein Annotations

EntrezGene:100232879	wikigene:100232879	Gene3D:2.60.110.10	MapMan:35.1	PDB:4JRU	ProteinID:AAQ10092
ProteinID:AAQ10092.1	ProteinID:ABD64681	ProteinID:ABD64681.1	ProteinID:ABD64682	ProteinID:ABD64682.1	EMBL:AF532965
EMBL:AJ237998	ProteinID:CAB85636	ProteinID:CAB85636.1	ProteinID:CCB58392	ProteinID:CCB58392.1	EMBL:DQ406687
EMBL:DQ406688	UniProt:F6HUG9	EMBL:FN596251	InterPro:IPR001938	InterPro:IPR037176	InterPro:Osmotin/thaumatin-like_sf
PFAM:PF00314	PIRSF:PIRSF002703	PRINTS:PR00347	ScanProsite:PS00316	PFscan:PS51367	PANTHER:PTHR31048
PANTHER:PTHR31048:SF36	SMART:SM00205	SUPFAM:SSF49870	SignalP:SignalP-noTM	EntrezGene:TL3	wikigene:TL3
TMHMM:TMhelix	InterPro:Thaumatin	InterPro:Thaumatin_CS	UniParc:UPI00015CD478	ArrayExpress:VIT_02s0025g04310	EnsemblPlantsGene:VIT_02s0025g04310
EnsemblPlants:VIT_02s0025g04310.t01	unigene:Vvi.8525	:	:	:	:

Description

No Description!

Coordinates

chr2:+:3809792..3812825

Molecular Weight (calculated)

23859.8 Da

IEP (calculated)

4.461

GRAVY (calculated)

-0.039

Length

225 amino acids

Sequence
(BLAST)

001: MGLCKILSIS SFLLTALFFT PSYAATFNIQ NHCSYTVWAA AVPGGGMQLG SGQSWSLNVN AGTTGGRVWA RTNCNFDASG NGKCETGDCG GLLQCTAYGT
101: PPNTLAEFAL NQFSNLDFFD ISLVDGFNVP MAFNPTSNGC TRGISCTADI VGECPAALKT TGGCNNPCTV FKTDEYCCNS GSCSATDYSR FFKTRCPDAY
201: SYPKDDQTST FTCTAGTNYE VVFCP

Best Arabidopsis Sequence Match ( AT4G11650.1 )
(BLAST)

001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN

Arabidopsis Description

OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.