Factsheet for VIT_02s0025g04250.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g04260.t01	Wine grape	extracellular	75.56	97.7
VIT_02s0025g04270.t01	Wine grape	extracellular	95.11	95.11
VIT_02s0025g04230.t01	Wine grape	extracellular	93.78	93.78
VIT_02s0025g04310.t01	Wine grape	extracellular	79.56	79.56
VIT_02s0025g04300.t01	Wine grape	extracellular	79.56	79.56
VIT_02s0025g04290.t01	Wine grape	extracellular	78.22	78.57
KRH59832	Soybean	extracellular	76.0	77.03
GSMUA_Achr6P31470_001	Banana	endoplasmic reticulum, extracellular	62.22	75.68
VIT_02s0025g04280.t01	Wine grape	extracellular	79.56	75.53
KRH59826	Soybean	extracellular	73.33	73.66
GSMUA_Achr7P16510_001	Banana	endoplasmic reticulum, extracellular	58.22	71.98
GSMUA_Achr6P31500_001	Banana	endoplasmic reticulum, extracellular	43.11	71.32
GSMUA_Achr4P31970_001	Banana	extracellular	54.67	69.49
VIT_02s0025g04320.t01	Wine grape	cytosol	28.89	69.15
Os03t0663500-00	Rice	extracellular	67.11	68.95
VIT_02s0025g04330.t01	Wine grape	extracellular	67.56	68.47
TraesCS4B01G017300.1	Wheat	cytosol, mitochondrion	51.56	67.05
OQU91235	Sorghum	extracellular	65.78	64.07
TraesCS4D01G015800.1	Wheat	unclear	66.22	63.95
Zm00001d033455_P001	Maize	extracellular	65.33	63.91
TraesCS4A01G296300.1	Wheat	extracellular, unclear	64.89	63.76
KRH77506	Soybean	extracellular	63.11	63.68
KRH27960	Soybean	endoplasmic reticulum, extracellular	63.11	63.39
HORVU4Hr1G002640.1	Barley	cytosol	27.56	63.27
EER99598	Sorghum	endoplasmic reticulum, extracellular	65.33	63.09
Zm00001d021901_P001	Maize	extracellular	62.22	61.67
TraesCS4A01G296400.1	Wheat	cytosol	27.56	61.39
TraesCS4D01G015600.1	Wheat	extracellular	63.56	60.85
GSMUA_Achr9P26190_001	Banana	extracellular	54.22	59.8
VIT_02s0025g04340.t01	Wine grape	endoplasmic reticulum, extracellular, plastid	69.33	59.54
HORVU4Hr1G002650.2	Barley	extracellular	64.0	56.47
Os03t0661600-01	Rice	extracellular	66.22	53.02

Protein Annotations

EntrezGene:100249610	wikigene:100249610	EntrezGene:100254732	wikigene:100254732	Gene3D:2.60.110.10	MapMan:35.1
EMBL:AM438519	EMBL:AM444180	ProteinID:CAN76134	ProteinID:CAN76134.1	ProteinID:CAN80707	ProteinID:CAN80707.1
ProteinID:CCB58386	ProteinID:CCB58386.1	UniProt:F6HUG3	EMBL:FN596251	InterPro:IPR001938	InterPro:IPR037176
EntrezGene:LOC100249610	wikigene:LOC100249610	EntrezGene:LOC100254732	wikigene:LOC100254732	InterPro:Osmotin/thaumatin-like_sf	PFAM:PF00314
PIRSF:PIRSF002703	PRINTS:PR00347	ScanProsite:PS00316	PFscan:PS51367	PANTHER:PTHR31048	PANTHER:PTHR31048:SF36
SMART:SM00205	SUPFAM:SSF49870	SignalP:SignalP-noTM	TMHMM:TMhelix	InterPro:Thaumatin	InterPro:Thaumatin_CS
UniParc:UPI0001982C51	ArrayExpress:VIT_02s0025g04250	EnsemblPlantsGene:VIT_02s0025g04250	EnsemblPlants:VIT_02s0025g04250.t01	RefSeq:XP_002283064	RefSeq:XP_002283064.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:3775409..3776121

Molecular Weight (calculated)

24237.5 Da

IEP (calculated)

8.117

GRAVY (calculated)

-0.168

Length

225 amino acids

Sequence
(BLAST)

001: MGLFKSLSIS SFLLITLFFT SAHAAIFNIQ NRCSYTVWAA AVPGGGRRLD PRQSWSLTVN PGTTGARIWA RTGCSFNGAG RGRCQTGDCG GVLQCTAYGA
101: PPNTLAEFAL NQFNNLDFFD ISLVDGFNVP MAFNPTSNGC SRGIRCTANI VGQCPNQLRA QGGCNNPCTV FKTDPYCCNS GSCGPTDYSR YFKTRCPDAY
201: SYPKDDQTST FTCPGGTNYD VIFCP

Best Arabidopsis Sequence Match ( AT1G75030.1 )
(BLAST)

001: MAKISSIHIL FFVFITSGIA DSATVFTLQN SCAYTVWPGT LSGNSITLGD GGFPLTPGAS VQLTAPTGWS GRFWARTGCN FDASGHGTCV TGDCGGVLKC
101: TGGGVPPATL AEFTVGSSNA GMDFYDVSLV DGYNVKMGIK PQGGFGNCKY AGCVSDINEI CPSELRIMDP NSGSVAACKS ACAAFSSPEF CCTGAHATPQ
201: TCSPTYYSSM FKNACPSAYS YAYDDASSTF TCTGSNYLIT FCPTQS

Arabidopsis Description

ATLP-3At1g75030 [Source:UniProtKB/TrEMBL;Acc:Q9C9P9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.