Subcellular Localization
min:
: max
Winner_takes_all: unclear, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
unclear:
25769308
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G017300.1 | Wheat | cytosol, mitochondrion | 69.87 | 92.49 |
| TraesCS4D01G015800.1 | Wheat | unclear | 90.39 | 88.84 |
| HORVU4Hr1G002650.2 | Barley | extracellular | 93.01 | 83.53 |
| TraesCS4A01G296400.1 | Wheat | cytosol | 34.5 | 78.22 |
| OQU91235 | Sorghum | extracellular | 75.98 | 75.32 |
| Zm00001d033455_P001 | Maize | extracellular | 75.11 | 74.78 |
| VIT_02s0025g04270.t01 | Wine grape | extracellular | 64.19 | 65.33 |
| VIT_02s0025g04230.t01 | Wine grape | extracellular | 63.76 | 64.89 |
| VIT_02s0025g04250.t01 | Wine grape | extracellular | 63.76 | 64.89 |
| VIT_02s0025g04260.t01 | Wine grape | extracellular | 48.47 | 63.79 |
| GSMUA_Achr6P31470_001 | Banana | endoplasmic reticulum, extracellular | 50.66 | 62.7 |
| KRH59832 | Soybean | extracellular | 59.83 | 61.71 |
| KRH59826 | Soybean | extracellular | 59.83 | 61.16 |
| PGSC0003DMT400010892 | Potato | cytosol | 34.06 | 60.47 |
| VIT_02s0025g04300.t01 | Wine grape | extracellular | 59.39 | 60.44 |
| VIT_02s0025g04310.t01 | Wine grape | extracellular | 59.39 | 60.44 |
| VIT_02s0025g04290.t01 | Wine grape | extracellular | 58.52 | 59.82 |
| Os03t0661600-01 | Rice | extracellular | 73.36 | 59.79 |
| GSMUA_Achr6P31500_001 | Banana | endoplasmic reticulum, extracellular | 35.37 | 59.56 |
| TraesCS5A01G018400.1 | Wheat | extracellular | 50.22 | 57.5 |
| Solyc12g056390.1.1 | Tomato | extracellular | 56.77 | 57.27 |
| VIT_02s0025g04280.t01 | Wine grape | extracellular | 58.95 | 56.96 |
| PGSC0003DMT400010886 | Potato | cytosol | 55.9 | 56.39 |
| PGSC0003DMT400010887 | Potato | cytosol, mitochondrion, nucleus | 41.48 | 55.88 |
| TraesCS5A01G017900.1 | Wheat | golgi | 54.15 | 55.11 |
| CDY41250 | Canola | extracellular | 55.02 | 54.55 |
| Bra013674.1-P | Field mustard | extracellular | 55.02 | 54.55 |
| TraesCS5A01G018100.1 | Wheat | unclear | 53.28 | 54.22 |
| KRH77506 | Soybean | extracellular | 52.4 | 53.81 |
| KRH27960 | Soybean | endoplasmic reticulum, extracellular | 51.97 | 53.12 |
| CDY53136 | Canola | extracellular | 53.28 | 52.81 |
| PGSC0003DMT400010891 | Potato | cytosol | 49.34 | 52.31 |
| TraesCS4A01G498000.1 | Wheat | extracellular | 40.17 | 52.27 |
| TraesCS2A01G110300.1 | Wheat | extracellular | 39.74 | 51.7 |
| TraesCS5A01G018000.1 | Wheat | extracellular | 52.84 | 51.49 |
| Solyc12g056360.1.1 | Tomato | extracellular | 50.22 | 50.22 |
| TraesCS7A01G558500.1 | Wheat | extracellular | 37.12 | 49.13 |
| TraesCS5A01G018200.1 | Wheat | endoplasmic reticulum, extracellular | 35.81 | 47.95 |
| TraesCS5A01G018300.1 | Wheat | extracellular | 35.37 | 47.37 |
| Solyc12g056380.1.1 | Tomato | extracellular | 46.72 | 46.72 |
| PGSC0003DMT400010888 | Potato | extracellular | 26.64 | 43.26 |
| TraesCS3A01G226300.1 | Wheat | endoplasmic reticulum, extracellular | 33.19 | 41.3 |
| TraesCS5A01G018500.1 | Wheat | extracellular | 30.57 | 38.89 |
| TraesCS5A01G019500.1 | Wheat | endoplasmic reticulum, extracellular | 30.13 | 37.5 |
| Solyc12g056370.1.1 | Tomato | cytosol | 34.5 | 33.76 |
| PGSC0003DMT400010890 | Potato | extracellular | 58.08 | 31.22 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G296300.1 | EnsemblPlantsGene:TraesCS4A01G296300 | Gene3D:2.60.110.10 | InterPro:IPR001938 | InterPro:IPR037176 | InterPro:Osmotin/thaumatin-like_sf |
| InterPro:Thaumatin | InterPro:Thaumatin_CS | PANTHER:PTHR31048 | PANTHER:PTHR31048:SF47 | PFAM:PF00314 | PFscan:PS51367 |
| PIRSF:PIRSF002703 | PRINTS:PR00347 | ScanProsite:PS00316 | SEG:seg | SignalP:SignalP-noTM | SMART:SM00205 |
| SUPFAM:SSF49870 | TMHMM:TMhelix | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr4A:+:596523171..596523860
Molecular Weight (calculated)
23923.2 Da
IEP (calculated)
7.298
GRAVY (calculated)
-0.078
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSSVLLPV LLLVAVAGAE AATFTVINKC QYTVWAAAVP AGGGRKLDAG QTWSIDVPAG TTSGRVWART GCSFDGAGNG RCQTGDCGGK LQCTQYGQAP
101: NTLAEFGLNK YMGQDFFDIS LIDGFNVPMS FVPAPGTSGC PKGGPRCPRV ITPQCPSELR AAGGCNNACT VFKEDRYCCT GSAANNCGPT DYSRFFKGQC
201: SDAYSYPKDD ATSIFTCPGG TNYQVIFCP
101: NTLAEFGLNK YMGQDFFDIS LIDGFNVPMS FVPAPGTSGC PKGGPRCPRV ITPQCPSELR AAGGCNNACT VFKEDRYCCT GSAANNCGPT DYSRFFKGQC
201: SDAYSYPKDD ATSIFTCPGG TNYQVIFCP
001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN
Arabidopsis Description
OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.