Factsheet for PGSC0003DMT400010891

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010892	Potato	cytosol	49.07	82.17
PGSC0003DMT400010887	Potato	cytosol, mitochondrion, nucleus	64.35	81.76
Solyc12g056360.1.1	Tomato	extracellular	83.33	78.6
VIT_02s0025g04320.t01	Wine grape	cytosol	29.17	67.02
PGSC0003DMT400010888	Potato	extracellular	39.35	60.28
PGSC0003DMT400010886	Potato	cytosol	62.04	59.03
GSMUA_Achr7P16510_001	Banana	endoplasmic reticulum, extracellular	49.07	58.24
KRH59832	Soybean	extracellular	59.72	58.11
KRH59826	Soybean	extracellular	58.8	56.7
Os03t0663500-00	Rice	extracellular	56.48	55.71
TraesCS4A01G296400.1	Wheat	cytosol	25.93	55.45
GSMUA_Achr6P31470_001	Banana	endoplasmic reticulum, extracellular	47.22	55.14
GSMUA_Achr4P31970_001	Banana	extracellular	44.91	54.8
PGSC0003DMT400007865	Potato	extracellular	56.94	54.42
TraesCS4B01G017300.1	Wheat	cytosol, mitochondrion	43.52	54.34
KRH27960	Soybean	endoplasmic reticulum, extracellular	55.56	53.57
PGSC0003DMT400034395	Potato	extracellular	52.78	52.78
KRH77506	Soybean	extracellular	54.17	52.47
GSMUA_Achr6P31500_001	Banana	endoplasmic reticulum, extracellular	32.87	52.21
PGSC0003DMT400007870	Potato	extracellular	59.26	52.03
TraesCS4D01G015600.1	Wheat	extracellular	55.09	50.64
PGSC0003DMT400007869	Potato	cytosol	57.87	50.61
Zm00001d033455_P001	Maize	extracellular	53.7	50.43
Zm00001d021901_P001	Maize	extracellular	52.78	50.22
OQU91235	Sorghum	extracellular	53.7	50.22
PGSC0003DMT400007868	Potato	extracellular	56.48	49.39
TraesCS4D01G015800.1	Wheat	unclear	53.24	49.36
TraesCS4A01G296300.1	Wheat	extracellular, unclear	52.31	49.34
PGSC0003DMT400007906	Potato	extracellular	56.48	48.8
PGSC0003DMT400007905	Potato	extracellular	56.02	48.4
EER99598	Sorghum	endoplasmic reticulum, extracellular	51.85	48.07
GSMUA_Achr9P26190_001	Banana	extracellular	42.13	44.61
Os03t0661600-01	Rice	extracellular	54.17	41.64
PGSC0003DMT400010890	Potato	extracellular	62.96	31.92
PGSC0003DMT400007866	Potato	endoplasmic reticulum, extracellular	22.69	26.92

Protein Annotations

EnsemblPlants:PGSC0003DMT400010891	EnsemblPlantsGene:PGSC0003DMG400004263	Gene3D:2.60.110.10	InterPro:IPR001938	InterPro:IPR037176	InterPro:Osmotin/thaumatin-like_sf
InterPro:Thaumatin	InterPro:Thaumatin_CS	PANTHER:PTHR31048	PANTHER:PTHR31048:SF47	PFAM:PF00314	PFscan:PS51367
PGSC:PGSC0003DMG400004263	PIRSF:PIRSF002703	PRINTS:PR00347	ScanProsite:PS00316	SEG:seg	SMART:SM00205
SUPFAM:SSF49870	UniParc:UPI000296EFFB	UniProt:M0ZYQ0	MapMan:35.1	:	:

Description

Thaumatin [Source:PGSC_GENE;Acc:PGSC0003DMG400004263]

Coordinates

chr12:+:54204358..54205394

Molecular Weight (calculated)

23659.3 Da

IEP (calculated)

4.742

GRAVY (calculated)

-0.350

Length

216 amino acids

Sequence
(BLAST)

001: MTSHLFSTQA SSTIDIHNNC PFTVWAAAVP HSRGGRQLEY GETWIIEVNT TKSGRIWGRT NCNFNTLGRG QCQTGDCNGL LECQTFSSTP PNTLAEYALN
101: QNSNNDFFDI ALVEGFNIPM EFSPVSADEC SVRISCTADI IGQCPNELRT PGGCNSPCTV FKTNEYCCTS GNCGPTNYSR FFKDKCSTSY SYLDDSSSTF
201: FCPSGSGTNY RVVFCP

Best Arabidopsis Sequence Match ( AT4G11650.1 )
(BLAST)

001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN

Arabidopsis Description

OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.