Factsheet for PGSC0003DMT400007870

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g080650.1.1	Tomato	extracellular	99.59	99.59
PGSC0003DMT400007865	Potato	extracellular	84.96	92.48
PGSC0003DMT400007868	Potato	extracellular	91.87	91.5
PGSC0003DMT400007869	Potato	cytosol	91.06	90.69
PGSC0003DMT400034395	Potato	extracellular	76.83	87.5
PGSC0003DMT400007906	Potato	extracellular	81.71	80.4
PGSC0003DMT400007905	Potato	extracellular	79.67	78.4
PGSC0003DMT400010886	Potato	cytosol	61.38	66.52
AT4G11650.1	Thale cress	endoplasmic reticulum, extracellular	65.85	66.39
Bra033138.1-P	Field mustard	endoplasmic reticulum, extracellular	63.82	64.34
CDY25290	Canola	endoplasmic reticulum, extracellular	63.82	64.34
PGSC0003DMT400010892	Potato	cytosol	33.74	64.34
VIT_02s0025g04340.t01	Wine grape	endoplasmic reticulum, extracellular, plastid	67.48	63.36
KRH77507	Soybean	extracellular	63.41	62.65
PGSC0003DMT400010887	Potato	cytosol, mitochondrion, nucleus	41.87	60.59
PGSC0003DMT400010891	Potato	cytosol	52.03	59.26
PGSC0003DMT400010888	Potato	extracellular	29.67	51.77
PGSC0003DMT400007866	Potato	endoplasmic reticulum, extracellular	31.3	42.31
PGSC0003DMT400010890	Potato	extracellular	61.79	35.68

Protein Annotations

EntrezGene:102584780	Gene3D:2.60.110.10	MapMan:35.1	ProteinID:AAP14932	ProteinID:AAP14932.1	ProteinID:AAP14938
ProteinID:AAP14938.1	ProteinID:AAU95241	ProteinID:AAU95241.1	EMBL:AY256425	EMBL:AY256431	EMBL:AY737312
InterPro:IPR001938	InterPro:IPR037176	UniProt:M0ZTN1	InterPro:Osmotin/thaumatin-like_sf	PFAM:PF00314	EnsemblPlantsGene:PGSC0003DMG400003044
PGSC:PGSC0003DMG400003044	EnsemblPlants:PGSC0003DMT400007870	PIRSF:PIRSF002703	PRINTS:PR00347	ScanProsite:PS00316	PFscan:PS51367
PANTHER:PTHR31048	PANTHER:PTHR31048:SF47	SMART:SM00205	SUPFAM:SSF49870	SignalP:SignalP-noTM	TMHMM:TMhelix
InterPro:Thaumatin	InterPro:Thaumatin_CS	UniParc:UPI000044F2B1	RefSeq:XP_006358887.1	:	:

Description

Osmotin [Source:PGSC_GENE;Acc:PGSC0003DMG400003044]

Coordinates

chr8:+:54292153..54293066

Molecular Weight (calculated)

26671.3 Da

IEP (calculated)

6.988

GRAVY (calculated)

-0.318

Length

246 amino acids

Sequence
(BLAST)

001: MAYLRSSFVF FLLAFVTYTY AATIEVRNNC PYTVWAASTP IGGGRRLDRG QTWVINAPRG TKMARIWGRT NCNFDGAGRG SCQTGDCGGV LQCTGWGKPP
101: NTLAEYALDQ FSNLDFWDIS LVDGFNIPMT FAPTNPSGGK CHAIHCTANI NGECPGSLRV PGGCNNPCTT FGGQQYCCTQ GPCGPTDLSR FFKQRCPDAY
201: SYPQDDPTST FTCPSGSTNY RVVFCPNGVT SPNFPLEMPS SDEEAK

Best Arabidopsis Sequence Match ( AT4G11650.1 )
(BLAST)

001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN

Arabidopsis Description

OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.