Factsheet for PGSC0003DMT400034395

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 4
golgi 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007865	Potato	extracellular	88.43	84.51
Solyc11g044390.1.1	Tomato	cytosol	29.17	80.77
PGSC0003DMT400007870	Potato	extracellular	87.5	76.83
PGSC0003DMT400007868	Potato	extracellular	84.26	73.68
PGSC0003DMT400007869	Potato	cytosol	82.87	72.47
Solyc11g044400.1.1	Tomato	cytosol	28.24	70.11
PGSC0003DMT400007906	Potato	extracellular	77.31	66.8
PGSC0003DMT400007905	Potato	extracellular	75.93	65.6
PGSC0003DMT400010886	Potato	cytosol	63.89	60.79
AT4G11650.1	Thale cress	endoplasmic reticulum, extracellular	64.35	56.97
Bra033138.1-P	Field mustard	endoplasmic reticulum, extracellular	63.89	56.56
CDY25290	Canola	endoplasmic reticulum, extracellular	63.89	56.56
PGSC0003DMT400010887	Potato	cytosol, mitochondrion, nucleus	43.98	55.88
PGSC0003DMT400010892	Potato	cytosol	32.87	55.04
KRH77507	Soybean	extracellular	62.5	54.22
VIT_02s0025g04340.t01	Wine grape	endoplasmic reticulum, extracellular, plastid	65.74	54.2
PGSC0003DMT400010891	Potato	cytosol	52.78	52.78
PGSC0003DMT400010888	Potato	extracellular	32.87	50.35
PGSC0003DMT400007866	Potato	endoplasmic reticulum, extracellular	31.48	37.36
PGSC0003DMT400010890	Potato	extracellular	63.43	32.16

Protein Annotations

Gene3D:2.60.110.10	MapMan:35.1	ProteinID:AAU95243	ProteinID:AAU95243.1	EMBL:AY737314	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR001938	InterPro:IPR037176	UniProt:M1B0L7	InterPro:Osmotin/thaumatin-like_sf
PFAM:PF00314	EnsemblPlantsGene:PGSC0003DMG400013227	PGSC:PGSC0003DMG400013227	EnsemblPlants:PGSC0003DMT400034395	PIRSF:PIRSF002703	PRINTS:PR00347
ScanProsite:PS00316	PFscan:PS51367	PANTHER:PTHR31048	PANTHER:PTHR31048:SF47	SMART:SM00205	SUPFAM:SSF49870
SignalP:SignalP-noTM	InterPro:Thaumatin	InterPro:Thaumatin_CS	UniParc:UPI0002967338	SEG:seg	:

Description

Osmotin [Source:PGSC_GENE;Acc:PGSC0003DMG400013227]

Coordinates

chr00:-:37581796..37582686

Molecular Weight (calculated)

23581.7 Da

IEP (calculated)

7.700

GRAVY (calculated)

-0.297

Length

216 amino acids

Sequence
(BLAST)

001: MDYLIRSSSV FFLLSFVTYT YSTSFEVQNN CPYTIWAAST PIGGGRRLNK GQTWVINAPR GTKMARIWGR TNCNFDGSGR GSCQTGDCGG VLQCTGWGKS
101: PNTLAEYALN QFSNLDFWDI SLIEGFNIPM TFAPTNPSGG KCHAVQCTAN INGECPGQLK VPGGCNNPCT IGQCGPNDLS RFFKQRCPDA YSYPQDDPTS
201: LFACPSDSTN YRVVFC

Best Arabidopsis Sequence Match ( AT4G11650.1 )
(BLAST)

001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN

Arabidopsis Description

OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.