Factsheet for PGSC0003DMT400007869

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g080640.1.1	Tomato	extracellular	95.55	95.55
PGSC0003DMT400007870	Potato	extracellular	90.69	91.06
PGSC0003DMT400007868	Potato	extracellular	90.28	90.28
PGSC0003DMT400007865	Potato	extracellular	79.76	87.17
PGSC0003DMT400034395	Potato	extracellular	72.47	82.87
PGSC0003DMT400007906	Potato	extracellular	76.52	75.6
PGSC0003DMT400007905	Potato	extracellular	74.9	74.0
AT4G11650.1	Thale cress	endoplasmic reticulum, extracellular	63.56	64.34
PGSC0003DMT400010892	Potato	cytosol	33.6	64.34
Bra033138.1-P	Field mustard	endoplasmic reticulum, extracellular	63.16	63.93
CDY25290	Canola	endoplasmic reticulum, extracellular	63.16	63.93
PGSC0003DMT400010886	Potato	cytosol	57.49	62.56
VIT_02s0025g04340.t01	Wine grape	endoplasmic reticulum, extracellular, plastid	65.59	61.83
KRH77507	Soybean	extracellular	61.13	60.64
PGSC0003DMT400010891	Potato	cytosol	50.61	57.87
PGSC0003DMT400010887	Potato	cytosol, mitochondrion, nucleus	39.68	57.65
PGSC0003DMT400010888	Potato	extracellular	28.74	50.35
PGSC0003DMT400007866	Potato	endoplasmic reticulum, extracellular	31.17	42.31
PGSC0003DMT400010890	Potato	extracellular	58.7	34.04

Protein Annotations

EntrezGene:102585092	Gene3D:2.60.110.10	MapMan:35.1	ProteinID:AAP14933	ProteinID:AAP14933.1	ProteinID:AAP14934
ProteinID:AAP14934.1	ProteinID:AAP14935	ProteinID:AAP14935.1	ProteinID:AAP14936	ProteinID:AAP14936.1	ProteinID:AAP14937
ProteinID:AAP14937.1	ProteinID:AAP14939	ProteinID:AAP14939.1	ProteinID:AAP14940	ProteinID:AAP14940.1	ProteinID:AAP14941
ProteinID:AAP14941.1	ProteinID:AAP14942	ProteinID:AAP14942.1	ProteinID:AAP14943	ProteinID:AAP14943.1	ProteinID:AAP14944
ProteinID:AAP14944.1	ProteinID:AAP14945	ProteinID:AAP14945.1	ProteinID:AAP14946	ProteinID:AAP14946.1	ProteinID:AAP14947
ProteinID:AAP14947.1	ProteinID:AAP14948	ProteinID:AAP14948.1	EMBL:AY256426	EMBL:AY256427	EMBL:AY256428
EMBL:AY256429	EMBL:AY256430	EMBL:AY256432	EMBL:AY256433	EMBL:AY256434	EMBL:AY256435
EMBL:AY256436	EMBL:AY256437	EMBL:AY256438	EMBL:AY256439	EMBL:AY256440	EMBL:AY256441
InterPro:IPR001938	InterPro:IPR037176	UniProt:M0ZTN0	InterPro:Osmotin/thaumatin-like_sf	PFAM:PF00314	EnsemblPlantsGene:PGSC0003DMG400003043
PGSC:PGSC0003DMG400003043	EnsemblPlants:PGSC0003DMT400007869	PIRSF:PIRSF002703	PRINTS:PR00347	ScanProsite:PS00316	PFscan:PS51367
PANTHER:PTHR31048	PANTHER:PTHR31048:SF47	SMART:SM00205	SUPFAM:SSF49870	SignalP:SignalP-noTM	InterPro:Thaumatin
InterPro:Thaumatin_CS	UniParc:UPI000044F2B0	RefSeq:XP_006358888.1	:	:	:

Description

Osmotin [Source:PGSC_GENE;Acc:PGSC0003DMG400003043]

Coordinates

chr8:+:54289421..54290377

Molecular Weight (calculated)

26602.5 Da

IEP (calculated)

8.117

GRAVY (calculated)

-0.268

Length

247 amino acids

Sequence
(BLAST)

001: MGYLRSSFIF SLLAFVTYTY AATIEVRNNC PYTVWAASTP IGGGRRLNKG QTWVINAPRG TKMARIWGRT GCNFNAAGRG SCQTGDCGGV LQCTGWGKPP
101: NTLAEYALDQ FSNLDFWDIS LVDGFNIPMT FAPTKPSAGK CHAIHCTANI NGECPRALKV PGGCNNPCTT FGGQQYCCTQ GPCGPTELSK FFKKRCPDAY
201: SYPQDDPTST FTCPGGSTNY KVVFCPNGVA DPNFPLEMPA STDEVAK

Best Arabidopsis Sequence Match ( AT4G11650.1 )
(BLAST)

001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN

Arabidopsis Description

OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.