Factsheet for Solyc08g080640.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 22364583
extracellular: 22892874
nucleus: 25464976
extracellular: 26583031
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 26583031 doi

F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken

Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007869	Potato	cytosol	95.55	95.55
Solyc08g080620.1.1	Tomato	extracellular	83.4	91.15
Solyc08g080650.1.1	Tomato	extracellular	89.88	90.24
Solyc08g080610.1.1	Tomato	cytosol	56.68	85.37
Solyc08g080600.1.1	Tomato	cytosol	23.89	78.67
Solyc08g080670.1.1	Tomato	extracellular	75.3	74.4
Solyc08g080660.1.1	Tomato	extracellular	74.9	74.0
Solyc11g044400.1.1	Tomato	cytosol	22.67	64.37
Solyc11g044390.1.1	Tomato	cytosol	20.24	64.1
AT4G11650.1	Thale cress	endoplasmic reticulum, extracellular	63.16	63.93
Bra033138.1-P	Field mustard	endoplasmic reticulum, extracellular	62.75	63.52
CDY25290	Canola	endoplasmic reticulum, extracellular	62.75	63.52
VIT_02s0025g04340.t01	Wine grape	endoplasmic reticulum, extracellular, plastid	66.8	62.98
Solyc12g056390.1.1	Tomato	extracellular	56.68	61.67
KRH77507	Soybean	extracellular	61.54	61.04
Solyc12g056360.1.1	Tomato	extracellular	51.82	55.9
Solyc08g080590.2.1	Tomato	nucleus	34.82	54.78
Solyc12g056380.1.1	Tomato	extracellular	50.2	54.15
Solyc12g056370.1.1	Tomato	cytosol	34.82	36.75

Protein Annotations

Gene3D:2.60.110.10	PDB:2I0W	MapMan:35.1	UniProt:A0A0P0UWG5	ProteinID:AAC64171.1	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150
GO:GO:0009605	GO:GO:0009607	GO:GO:0031640	GO:GO:0050832	InterPro:IPR001938	InterPro:IPR037176
EMBL:LC073755	EMBL:M21346	InterPro:Osmotin/thaumatin-like_sf	UniProt:P12670	PFAM:PF00314	PIRSF:PIRSF002703
PRINTS:PR00347	ScanProsite:PS00316	PFscan:PS51367	PANTHER:PTHR31048	PANTHER:PTHR31048:SF47	SMART:SM00205
SUPFAM:SSF49870	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc08g080640.1	EnsemblPlants:Solyc08g080640.1.1	TMHMM:TMhelix	InterPro:Thaumatin
InterPro:Thaumatin_CS	UniParc:UPI00001303C7	:	:	:	:

Description

Protein NP24 [Source:UniProtKB/Swiss-Prot;Acc:P12670]

Coordinates

chr8:+:63882109..63882852

Molecular Weight (calculated)

26647.6 Da

IEP (calculated)

7.960

GRAVY (calculated)

-0.246

Length

247 amino acids

Sequence
(BLAST)

001: MGYLTSSFVL FFLLCVTYTY AATIEVRNNC PYTVWAASTP IGGGRRLNRG QTWVINAPRG TKMARIWGRT GCNFNAAGRG TCQTGDCGGV LQCTGWGKPP
101: NTLAEYALDQ FSNLDFWDIS LVDGFNIPMT FAPTKPSGGK CHAIHCTANI NGECPRALKV PGGCNNPCTT FGGQQYCCTQ GPCGPTELSK FFKKRCPDAY
201: SYPQDDPTST FTCPGGSTNY RVVFCPNGVA DPNFPLEMPA STDEVAK

Best Arabidopsis Sequence Match ( AT4G11650.1 )
(BLAST)

001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN

Arabidopsis Description

OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.