Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 7
- plasma membrane 5
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400007905 | Potato | extracellular | 98.0 | 98.0 |
| Solyc08g080670.1.1 | Tomato | extracellular | 95.2 | 95.2 |
| Solyc08g080610.1.1 | Tomato | cytosol | 52.0 | 79.27 |
| Solyc08g080650.1.1 | Tomato | extracellular | 78.0 | 79.27 |
| Solyc08g080600.1.1 | Tomato | cytosol | 23.2 | 77.33 |
| Solyc08g080620.1.1 | Tomato | extracellular | 69.6 | 76.99 |
| Solyc08g080640.1.1 | Tomato | extracellular | 74.0 | 74.9 |
| Solyc11g044390.1.1 | Tomato | cytosol | 20.8 | 66.67 |
| Solyc11g044400.1.1 | Tomato | cytosol | 22.0 | 63.22 |
| AT4G11650.1 | Thale cress | endoplasmic reticulum, extracellular | 60.8 | 62.3 |
| VIT_02s0025g04340.t01 | Wine grape | endoplasmic reticulum, extracellular, plastid | 64.8 | 61.83 |
| Solyc12g056390.1.1 | Tomato | extracellular | 54.8 | 60.35 |
| KRH77507 | Soybean | extracellular | 60.0 | 60.24 |
| CDY25290 | Canola | endoplasmic reticulum, extracellular | 58.4 | 59.84 |
| Bra033138.1-P | Field mustard | endoplasmic reticulum, extracellular | 58.4 | 59.84 |
| Solyc12g056360.1.1 | Tomato | extracellular | 52.0 | 56.77 |
| Solyc12g056380.1.1 | Tomato | extracellular | 49.6 | 54.15 |
| Solyc08g080590.2.1 | Tomato | nucleus | 31.6 | 50.32 |
| Solyc12g056370.1.1 | Tomato | cytosol | 34.4 | 36.75 |
Protein Annotations
| EnsemblPlants:Solyc08g080660.1.1 | EnsemblPlantsGene:Solyc08g080660.1 | Gene3D:2.60.110.10 | InterPro:IPR001938 | InterPro:IPR037176 | InterPro:Osmotin/thaumatin-like_sf |
| InterPro:Thaumatin | InterPro:Thaumatin_CS | PANTHER:PTHR31048 | PANTHER:PTHR31048:SF47 | PFAM:PF00314 | PFscan:PS51367 |
| PIRSF:PIRSF002703 | PRINTS:PR00347 | ScanProsite:PS00316 | SignalP:SignalP-noTM | SMART:SM00205 | SUPFAM:SSF49870 |
| TMHMM:TMhelix | UniParc:UPI000276BAE2 | UniProt:K4CP64 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr8:-:63887978..63888730
Molecular Weight (calculated)
27491.4 Da
IEP (calculated)
6.610
GRAVY (calculated)
-0.315
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHLTTCLVF FLLAFVTYTY GSGVFEVHNN CPYTVWAAAV PVGGGRRLER GQSWWFWAPP GTKMARIWGR TNCNFDGAGR GWCQTGDCGG VLDCKGWGKP
101: PNTLAEYALN QFGNLDFWDI SVIDGFNIPM SFGPTKPGPG KCHPIQCTAN INGECPGSLR VPGGCNNPCT TFGGQQYCCN HGPCGPTELS RFFKQRCPDA
201: YSYPQDDPTS TFTCQSWTTD YKIMFCPYGS THNETTNFPL EMPTSTLEVA
101: PNTLAEYALN QFGNLDFWDI SVIDGFNIPM SFGPTKPGPG KCHPIQCTAN INGECPGSLR VPGGCNNPCT TFGGQQYCCN HGPCGPTELS RFFKQRCPDA
201: YSYPQDDPTS TFTCQSWTTD YKIMFCPYGS THNETTNFPL EMPTSTLEVA
001: MANYSSIHIL FLVFITSGIA VSAATVFTLQ NSCPYTVWPG ILSGNDNTLG DGGFPLTPGA SVQLTAPAGW SGRFWARTGC NFDASGHGNC GTGDCGGVLK
101: CNGGGVPPVT LAEFTLVGDG GKDFYDVSLV DGYNVEMGIK PQGGSGDCHY AGCVADVNAV CPNELRLMDP HTGIIAACKS ACAAFNSEEF CCTGAHATPQ
201: TCSPTHYSAM FKSACPGAYS YAYDDATSTF TCTGSNYLIS FCPTRN
101: CNGGGVPPVT LAEFTLVGDG GKDFYDVSLV DGYNVEMGIK PQGGSGDCHY AGCVADVNAV CPNELRLMDP HTGIIAACKS ACAAFNSEEF CCTGAHATPQ
201: TCSPTHYSAM FKSACPGAYS YAYDDATSTF TCTGSNYLIS FCPTRN
Arabidopsis Description
Pathogenesis-related thaumatin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q1PFD2]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.