Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 7
- plasma membrane 5
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25464976
extracellular: 26583031 |
msms PMID:
26583031
doi
Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g080650.1.1 | Tomato | extracellular | 93.81 | 86.18 |
| Solyc08g080610.1.1 | Tomato | cytosol | 61.95 | 85.37 |
| Solyc08g080640.1.1 | Tomato | extracellular | 91.15 | 83.4 |
| PGSC0003DMT400007868 | Potato | extracellular | 90.27 | 82.59 |
| Solyc08g080600.1.1 | Tomato | cytosol | 26.55 | 80.0 |
| Solyc08g080670.1.1 | Tomato | extracellular | 79.65 | 72.0 |
| Solyc08g080660.1.1 | Tomato | extracellular | 76.99 | 69.6 |
| Solyc12g056390.1.1 | Tomato | extracellular | 65.93 | 65.64 |
| Solyc11g044400.1.1 | Tomato | cytosol | 25.22 | 65.52 |
| Solyc11g044390.1.1 | Tomato | cytosol | 22.12 | 64.1 |
| AT4G11650.1 | Thale cress | endoplasmic reticulum, extracellular | 69.03 | 63.93 |
| Bra033138.1-P | Field mustard | endoplasmic reticulum, extracellular | 67.26 | 62.3 |
| CDY25290 | Canola | endoplasmic reticulum, extracellular | 67.26 | 62.3 |
| KRH77507 | Soybean | extracellular | 66.37 | 60.24 |
| VIT_02s0025g04340.t01 | Wine grape | endoplasmic reticulum, extracellular, plastid | 68.14 | 58.78 |
| Solyc12g056360.1.1 | Tomato | extracellular | 57.08 | 56.33 |
| Solyc12g056380.1.1 | Tomato | extracellular | 56.19 | 55.46 |
| Solyc08g080590.2.1 | Tomato | nucleus | 37.17 | 53.5 |
| Solyc12g056370.1.1 | Tomato | cytosol | 38.5 | 37.18 |
Protein Annotations
| EMBL:AY093595 | EnsemblPlants:Solyc08g080620.1.1 | EnsemblPlantsGene:Solyc08g080620.1 | Gene3D:2.60.110.10 | InterPro:IPR001938 | InterPro:IPR037176 |
| InterPro:Osmotin/thaumatin-like_sf | InterPro:Thaumatin | InterPro:Thaumatin_CS | PANTHER:PTHR31048 | PANTHER:PTHR31048:SF47 | PFAM:PF00314 |
| PFscan:PS51367 | PIRSF:PIRSF002703 | PRINTS:PR00347 | ScanProsite:PS00316 | SignalP:SignalP-noTM | SMART:SM00205 |
| SUPFAM:SSF49870 | TMHMM:TMhelix | UniParc:UPI00000A3B8C | UniProt:Q8LPU1 | MapMan:35.1 | : |
Description
PR-5x [Source:UniProtKB/TrEMBL;Acc:Q8LPU1]
Coordinates
chr8:+:63854913..63855593
Molecular Weight (calculated)
24591.0 Da
IEP (calculated)
8.233
GRAVY (calculated)
-0.245
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MGYLTSSFIF FFLALVTYTY AATIEVRNNC PYTVWAASTP IGGGRRLDRG QTWVINAPRG TKMARIWGRT NCNFNGAGRG SCQTGDCGGV LHCTGWGKPP
101: NTLAEYALDQ FSNLDFWDIS LVDGFNIPMT FAPTNPSGGK CHAIHCTANI NGECPSPLRV PGGCNNPCTT FGGQQYCCTQ GPCGPTKFSR FFKQRCPNAY
201: SYPQDDPTSL FTCPSGSTNY RVVFCP
101: NTLAEYALDQ FSNLDFWDIS LVDGFNIPMT FAPTNPSGGK CHAIHCTANI NGECPSPLRV PGGCNNPCTT FGGQQYCCTQ GPCGPTKFSR FFKQRCPNAY
201: SYPQDDPTSL FTCPSGSTNY RVVFCP
001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN
Arabidopsis Description
OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.