Factsheet for Solyc12g056390.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 22364583
extracellular: 26583031
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26583031 doi

F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken

Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010886	Potato	cytosol	97.8	97.8
VIT_02s0025g04330.t01	Wine grape	extracellular	77.09	78.83
Solyc08g080600.1.1	Tomato	cytosol	24.23	73.33
Solyc08g080610.1.1	Tomato	cytosol	49.34	68.29
GSMUA_Achr7P16510_001	Banana	endoplasmic reticulum, extracellular	53.74	67.03
GSMUA_Achr4P31970_001	Banana	extracellular	51.98	66.67
KRH59832	Soybean	extracellular	65.2	66.67
GSMUA_Achr6P31470_001	Banana	endoplasmic reticulum, extracellular	54.19	66.49
Solyc08g080620.1.1	Tomato	extracellular	65.64	65.93
GSMUA_Achr6P31500_001	Banana	endoplasmic reticulum, extracellular	39.21	65.44
KRH59826	Soybean	extracellular	62.11	62.95
CDY41250	Canola	extracellular	63.44	62.34
Os03t0663500-00	Rice	extracellular	59.91	62.1
TraesCS4A01G296400.1	Wheat	cytosol	27.31	61.39
Solyc08g080650.1.1	Tomato	extracellular	66.52	61.38
Solyc12g056360.1.1	Tomato	extracellular	61.67	61.14
Bra013674.1-P	Field mustard	extracellular	62.11	61.04
KRH27960	Soybean	endoplasmic reticulum, extracellular	59.91	60.71
Solyc11g044390.1.1	Tomato	cytosol	20.7	60.26
CDY53136	Canola	extracellular	61.23	60.17
KRH77506	Soybean	extracellular	59.03	60.09
OQU91235	Sorghum	extracellular	60.79	59.74
TraesCS4D01G015600.1	Wheat	extracellular	61.23	59.15
TraesCS4B01G017300.1	Wheat	cytosol, mitochondrion	44.93	58.96
Zm00001d033455_P001	Maize	extracellular	59.03	58.26
TraesCS4D01G015800.1	Wheat	unclear	59.47	57.94
Solyc12g056380.1.1	Tomato	extracellular	58.15	57.64
Zm00001d021901_P001	Maize	extracellular	57.27	57.27
Solyc08g080670.1.1	Tomato	extracellular	63.0	57.2
EER99598	Sorghum	endoplasmic reticulum, extracellular	58.59	57.08
TraesCS4A01G296300.1	Wheat	extracellular, unclear	57.27	56.77
Solyc08g080640.1.1	Tomato	extracellular	61.67	56.68
GSMUA_Achr9P26190_001	Banana	extracellular	49.34	54.9
Solyc08g080660.1.1	Tomato	extracellular	60.35	54.8
Solyc11g044400.1.1	Tomato	cytosol	20.26	52.87
Os03t0661600-01	Rice	extracellular	60.79	49.11
Solyc08g080590.2.1	Tomato	nucleus	33.04	47.77
Solyc12g056370.1.1	Tomato	cytosol	45.81	44.44

Protein Annotations

EnsemblPlants:Solyc12g056390.1.1	EnsemblPlantsGene:Solyc12g056390.1	Gene3D:2.60.110.10	InterPro:IPR001938	InterPro:IPR037176	InterPro:Osmotin/thaumatin-like_sf
InterPro:Thaumatin	InterPro:Thaumatin_CS	PANTHER:PTHR31048	PANTHER:PTHR31048:SF44	PFAM:PF00314	PFscan:PS51367
PIRSF:PIRSF002703	PRINTS:PR00347	ScanProsite:PS00316	SMART:SM00205	SUPFAM:SSF49870	UniParc:UPI0002769EB4
UniProt:K4DFX0	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr12:+:62319830..62320513

Molecular Weight (calculated)

24988.3 Da

IEP (calculated)

5.174

GRAVY (calculated)

-0.316

Length

227 amino acids

Sequence
(BLAST)

001: MHFLKFFPLF VFLYFGQYYL YVTHAATFDI TNRCTYPVWA GASPGGGRRL DSGQTWNINV NPGTTQARIW GRTNCNFDGS GRGKCETGDC NGLLECQGYG
101: SPPNTLAEFA LNQPNNLDFV DISLVDGFNI PMEFSPINGG CRNLLCNAPI NDQCPNELRA PGGCNNPCTV FKTNEFCCTN GPGSCGPTDF SRFFKQRCPD
201: AYSYPQDDPT SLFTCPAGTN YKVVFCP

Best Arabidopsis Sequence Match ( AT4G11650.1 )
(BLAST)

001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN

Arabidopsis Description

OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.