Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 7
- plasma membrane 5
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g080600.1.1 | Tomato | cytosol | 24.2 | 50.67 |
| Solyc11g044400.1.1 | Tomato | cytosol | 26.11 | 47.13 |
| Solyc08g080620.1.1 | Tomato | extracellular | 53.5 | 37.17 |
| Solyc08g080640.1.1 | Tomato | extracellular | 54.78 | 34.82 |
| Solyc08g080650.1.1 | Tomato | extracellular | 53.5 | 34.15 |
| Solyc12g056390.1.1 | Tomato | extracellular | 47.77 | 33.04 |
| Solyc12g056360.1.1 | Tomato | extracellular | 46.5 | 31.88 |
| KRH77507 | Soybean | extracellular | 50.32 | 31.73 |
| Solyc08g080660.1.1 | Tomato | extracellular | 50.32 | 31.6 |
| Solyc08g080670.1.1 | Tomato | extracellular | 50.32 | 31.6 |
| AT4G11650.1 | Thale cress | endoplasmic reticulum, extracellular | 48.41 | 31.15 |
| Solyc12g056380.1.1 | Tomato | extracellular | 45.22 | 31.0 |
| Bra033138.1-P | Field mustard | endoplasmic reticulum, extracellular | 47.77 | 30.74 |
| CDY25290 | Canola | endoplasmic reticulum, extracellular | 47.77 | 30.74 |
| VIT_02s0025g04340.t01 | Wine grape | endoplasmic reticulum, extracellular, plastid | 50.96 | 30.53 |
| Solyc08g080610.1.1 | Tomato | cytosol | 27.39 | 26.22 |
| Solyc12g056370.1.1 | Tomato | cytosol | 27.39 | 18.38 |
| Solyc11g044390.1.1 | Tomato | cytosol | 6.37 | 12.82 |
Protein Annotations
| EnsemblPlants:Solyc08g080590.2.1 | EnsemblPlantsGene:Solyc08g080590.2 | Gene3D:2.60.110.10 | InterPro:IPR001938 | InterPro:IPR037176 | InterPro:Osmotin/thaumatin-like_sf |
| InterPro:Thaumatin | InterPro:Thaumatin_CS | PANTHER:PTHR31048 | PANTHER:PTHR31048:SF47 | PFAM:PF00314 | PFscan:PS51367 |
| PIRSF:PIRSF002703 | PRINTS:PR00347 | ScanProsite:PS00316 | SignalP:SignalP-noTM | SMART:SM00205 | SUPFAM:SSF49870 |
| TMHMM:TMhelix | UniParc:UPI000276BADE | UniProt:K4CP59 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr8:+:63844944..63845980
Molecular Weight (calculated)
17507.0 Da
IEP (calculated)
8.714
GRAVY (calculated)
-0.239
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTSIFILFS LFFTYANAAT ILVRNNCPYT VWAAGVPAGG GKRLDRGQTW TINAPPGTKQ ARVWGRTGCN FDASGKGKCQ TGDCNGLLVC KSFGVPPNTL
101: AEYALNQFEN KEYLYDDLVT FKFPSRFKLI AFDEMSMKMH GIESDPSFTL YEKLDKN
101: AEYALNQFEN KEYLYDDLVT FKFPSRFKLI AFDEMSMKMH GIESDPSFTL YEKLDKN
001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN
Arabidopsis Description
OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.