Factsheet for Solyc08g080650.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 22364583
extracellular: 22892874
nucleus: 25464976
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007870	Potato	extracellular	99.59	99.59
Solyc08g080620.1.1	Tomato	extracellular	86.18	93.81
Solyc08g080640.1.1	Tomato	extracellular	90.24	89.88
Solyc08g080610.1.1	Tomato	cytosol	58.13	87.2
Solyc08g080600.1.1	Tomato	cytosol	25.2	82.67
Solyc08g080670.1.1	Tomato	extracellular	81.3	80.0
Solyc08g080660.1.1	Tomato	extracellular	79.27	78.0
Solyc11g044390.1.1	Tomato	cytosol	21.95	69.23
Solyc11g044400.1.1	Tomato	cytosol	23.98	67.82
AT4G11650.1	Thale cress	endoplasmic reticulum, extracellular	66.26	66.8
Solyc12g056390.1.1	Tomato	extracellular	61.38	66.52
Bra033138.1-P	Field mustard	endoplasmic reticulum, extracellular	64.23	64.75
CDY25290	Canola	endoplasmic reticulum, extracellular	64.23	64.75
VIT_02s0025g04340.t01	Wine grape	endoplasmic reticulum, extracellular, plastid	67.89	63.74
KRH77507	Soybean	extracellular	63.82	63.05
Solyc12g056360.1.1	Tomato	extracellular	53.25	57.21
Solyc12g056380.1.1	Tomato	extracellular	51.22	55.02
Solyc08g080590.2.1	Tomato	nucleus	34.15	53.5
Solyc12g056370.1.1	Tomato	cytosol	36.99	38.89

Protein Annotations

Gene3D:2.60.110.10	MapMan:35.1	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150	GO:GO:0009605
GO:GO:0009607	GO:GO:0031640	GO:GO:0050832	InterPro:IPR001938	InterPro:IPR037176	UniProt:K4CP63
InterPro:Osmotin/thaumatin-like_sf	PFAM:PF00314	PIRSF:PIRSF002703	PRINTS:PR00347	ScanProsite:PS00316	PFscan:PS51367
PANTHER:PTHR31048	PANTHER:PTHR31048:SF47	SMART:SM00205	SUPFAM:SSF49870	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc08g080650.1
EnsemblPlants:Solyc08g080650.1.1	TMHMM:TMhelix	InterPro:Thaumatin	InterPro:Thaumatin_CS	UniParc:UPI000276BAE1	:

Description

No Description!

Coordinates

chr8:+:63884423..63885163

Molecular Weight (calculated)

26705.3 Da

IEP (calculated)

6.988

GRAVY (calculated)

-0.325

Length

246 amino acids

Sequence
(BLAST)

001: MAYLRSSFVF FLLAFVTYTY AATFEVRNNC PYTVWAASTP IGGGRRLDRG QTWVINAPRG TKMARIWGRT NCNFDGAGRG SCQTGDCGGV LQCTGWGKPP
101: NTLAEYALDQ FSNLDFWDIS LVDGFNIPMT FAPTNPSGGK CHAIHCTANI NGECPGSLRV PGGCNNPCTT FGGQQYCCTQ GPCGPTDLSR FFKQRCPDAY
201: SYPQDDPTST FTCPSGSTNY RVVFCPNGVT SPNFPLEMPS SDEEAK

Best Arabidopsis Sequence Match ( AT4G11650.1 )
(BLAST)

001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN

Arabidopsis Description

OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.