Factsheet for Solyc12g056360.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010892	Potato	cytosol	49.34	87.6
PGSC0003DMT400010891	Potato	cytosol	78.6	83.33
Solyc12g056380.1.1	Tomato	extracellular	72.05	72.05
VIT_02s0025g04320.t01	Wine grape	cytosol	28.38	69.15
Solyc08g080600.1.1	Tomato	cytosol	21.4	65.33
Solyc12g056390.1.1	Tomato	extracellular	61.14	61.67
Solyc08g080610.1.1	Tomato	cytosol	44.1	61.59
GSMUA_Achr7P16510_001	Banana	endoplasmic reticulum, extracellular	48.03	60.44
KRH59832	Soybean	extracellular	57.64	59.46
KRH59826	Soybean	extracellular	57.21	58.48
GSMUA_Achr6P31470_001	Banana	endoplasmic reticulum, extracellular	47.16	58.38
Os03t0663500-00	Rice	extracellular	55.46	57.99
TraesCS4A01G296400.1	Wheat	cytosol	25.33	57.43
Solyc08g080620.1.1	Tomato	extracellular	56.33	57.08
GSMUA_Achr4P31970_001	Banana	extracellular	43.67	56.5
KRH27960	Soybean	endoplasmic reticulum, extracellular	55.02	56.25
TraesCS4B01G017300.1	Wheat	cytosol, mitochondrion	42.36	56.07
KRH77506	Soybean	extracellular	53.71	55.16
Zm00001d021901_P001	Maize	extracellular	53.71	54.19
TraesCS4D01G015600.1	Wheat	extracellular	55.46	54.04
GSMUA_Achr6P31500_001	Banana	endoplasmic reticulum, extracellular	31.88	53.68
Solyc08g080650.1.1	Tomato	extracellular	57.21	53.25
Zm00001d033455_P001	Maize	extracellular	53.28	53.04
Solyc08g080670.1.1	Tomato	extracellular	57.21	52.4
OQU91235	Sorghum	extracellular	52.84	52.38
EER99598	Sorghum	endoplasmic reticulum, extracellular	53.28	52.36
Solyc08g080660.1.1	Tomato	extracellular	56.77	52.0
Solyc08g080640.1.1	Tomato	extracellular	55.9	51.82
TraesCS4A01G296300.1	Wheat	extracellular, unclear	50.22	50.22
TraesCS4D01G015800.1	Wheat	unclear	51.09	50.21
GSMUA_Achr9P26190_001	Banana	extracellular	44.54	50.0
Solyc11g044400.1.1	Tomato	cytosol	18.78	49.43
Solyc11g044390.1.1	Tomato	cytosol	16.16	47.44
Solyc08g080590.2.1	Tomato	nucleus	31.88	46.5
Os03t0661600-01	Rice	extracellular	54.15	44.13
HORVU5Hr1G051960.1	Barley	cytosol	11.79	39.71
Solyc12g056370.1.1	Tomato	cytosol	37.55	36.75

Protein Annotations

EnsemblPlants:Solyc12g056360.1.1	EnsemblPlantsGene:Solyc12g056360.1	Gene3D:2.60.110.10	InterPro:IPR001938	InterPro:IPR037176	InterPro:Osmotin/thaumatin-like_sf
InterPro:Thaumatin	InterPro:Thaumatin_CS	PANTHER:PTHR31048	PANTHER:PTHR31048:SF47	PFAM:PF00314	PFscan:PS51367
PIRSF:PIRSF002703	PRINTS:PR00347	ScanProsite:PS00316	SEG:seg	SignalP:SignalP-noTM	SMART:SM00205
SUPFAM:SSF49870	TMHMM:TMhelix	UniParc:UPI0002769EB1	UniProt:K4DFW7	MapMan:35.1	:

Description

No Description!

Coordinates

chr12:+:62311726..62312415

Molecular Weight (calculated)

25519.9 Da

IEP (calculated)

5.236

GRAVY (calculated)

-0.302

Length

229 amino acids

Sequence
(BLAST)

001: MSNRIINFFF IFFYVMISHL FSIQADSTID IHNNCPFTVW AAAVPHSRGG RQLEYGETWK IEVNTTNNGR IWGRTNCNFD SSGKGQCQTG DCNGLLECEG
101: NGKPPTTLAE YALNQFNNND FLDISVVDGF NIPMEFSPVS ADECSVRIRC TADIIGQCPN ELRTPGGCNN PCTVFKMNVY CCTSGNCGPT NYSRFFKDRC
201: LTSYSYPRDD SSSTFTCPNG TSYKVVFCP

Best Arabidopsis Sequence Match ( AT1G75030.1 )
(BLAST)

001: MAKISSIHIL FFVFITSGIA DSATVFTLQN SCAYTVWPGT LSGNSITLGD GGFPLTPGAS VQLTAPTGWS GRFWARTGCN FDASGHGTCV TGDCGGVLKC
101: TGGGVPPATL AEFTVGSSNA GMDFYDVSLV DGYNVKMGIK PQGGFGNCKY AGCVSDINEI CPSELRIMDP NSGSVAACKS ACAAFSSPEF CCTGAHATPQ
201: TCSPTYYSSM FKNACPSAYS YAYDDASSTF TCTGSNYLIT FCPTQS

Arabidopsis Description

ATLP-3At1g75030 [Source:UniProtKB/TrEMBL;Acc:Q9C9P9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.