Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 5
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P31500_001 | Banana | endoplasmic reticulum, extracellular | 64.86 | 88.24 |
| GSMUA_Achr7P16510_001 | Banana | endoplasmic reticulum, extracellular | 65.41 | 66.48 |
| GSMUA_Achr4P31970_001 | Banana | extracellular | 63.24 | 66.1 |
| GSMUA_Achr9P26190_001 | Banana | extracellular | 71.89 | 65.2 |
| VIT_02s0025g04230.t01 | Wine grape | extracellular | 76.76 | 63.11 |
| VIT_02s0025g04270.t01 | Wine grape | extracellular | 76.76 | 63.11 |
| VIT_02s0025g04250.t01 | Wine grape | extracellular | 75.68 | 62.22 |
| KRH59832 | Soybean | extracellular | 72.97 | 60.81 |
| VIT_02s0025g04310.t01 | Wine grape | extracellular | 73.51 | 60.44 |
| VIT_02s0025g04260.t01 | Wine grape | extracellular | 56.22 | 59.77 |
| VIT_02s0025g04300.t01 | Wine grape | extracellular | 72.43 | 59.56 |
| KRH59826 | Soybean | extracellular | 71.89 | 59.38 |
| Os03t0663500-00 | Rice | extracellular | 69.73 | 58.9 |
| Zm00001d021901_P001 | Maize | extracellular | 68.11 | 55.51 |
| OQU91235 | Sorghum | extracellular | 69.19 | 55.41 |
| VIT_02s0025g04280.t01 | Wine grape | extracellular | 70.81 | 55.27 |
| Zm00001d033455_P001 | Maize | extracellular | 68.65 | 55.22 |
| VIT_02s0025g04290.t01 | Wine grape | extracellular | 66.49 | 54.91 |
| Solyc12g056390.1.1 | Tomato | extracellular | 66.49 | 54.19 |
| PGSC0003DMT400010886 | Potato | cytosol | 65.95 | 53.74 |
| EER99598 | Sorghum | endoplasmic reticulum, extracellular | 67.57 | 53.65 |
| TraesCS4D01G015800.1 | Wheat | unclear | 65.95 | 52.36 |
| TraesCS4D01G015600.1 | Wheat | extracellular | 65.95 | 51.91 |
| KRH27960 | Soybean | endoplasmic reticulum, extracellular | 62.16 | 51.34 |
| KRH77506 | Soybean | extracellular | 61.62 | 51.12 |
| TraesCS4A01G296300.1 | Wheat | extracellular, unclear | 62.7 | 50.66 |
| PGSC0003DMT400010888 | Potato | extracellular | 38.38 | 50.35 |
| CDY41250 | Canola | extracellular | 61.62 | 49.35 |
| TraesCS4B01G017300.1 | Wheat | cytosol, mitochondrion | 45.95 | 49.13 |
| Bra013674.1-P | Field mustard | extracellular | 60.54 | 48.48 |
| PGSC0003DMT400010891 | Potato | cytosol | 55.14 | 47.22 |
| Solyc12g056360.1.1 | Tomato | extracellular | 58.38 | 47.16 |
| CDY53136 | Canola | extracellular | 57.84 | 46.32 |
| HORVU4Hr1G002650.2 | Barley | extracellular | 63.78 | 46.27 |
| PGSC0003DMT400010887 | Potato | cytosol, mitochondrion, nucleus | 42.16 | 45.88 |
| PGSC0003DMT400010892 | Potato | cytosol | 31.89 | 45.74 |
| Os03t0661600-01 | Rice | extracellular | 68.65 | 45.2 |
| Solyc12g056380.1.1 | Tomato | extracellular | 52.97 | 42.79 |
| TraesCS4A01G296400.1 | Wheat | cytosol | 21.08 | 38.61 |
| HORVU4Hr1G002640.1 | Barley | cytosol | 20.0 | 37.76 |
| Solyc12g056370.1.1 | Tomato | cytosol | 41.08 | 32.48 |
| PGSC0003DMT400010890 | Potato | extracellular | 68.65 | 29.81 |
Protein Annotations
| Gene3D:2.60.110.10 | MapMan:35.1 | EnsemblPlantsGene:GSMUA_Achr6G31470_001 | EnsemblPlants:GSMUA_Achr6P31470_001 | EnsemblPlants:GSMUA_Achr6T31470_001 | InterPro:IPR001938 |
| InterPro:IPR037176 | UniProt:M0TBU2 | InterPro:Osmotin/thaumatin-like_sf | PFAM:PF00314 | PIRSF:PIRSF002703 | PRINTS:PR00347 |
| ScanProsite:PS00316 | PFscan:PS51367 | PANTHER:PTHR31048 | PANTHER:PTHR31048:SF36 | SMART:SM00205 | SUPFAM:SSF49870 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | InterPro:Thaumatin | InterPro:Thaumatin_CS | UniParc:UPI000295C942 | SEG:seg |
Description
Thaumatin-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G31470_001]
Coordinates
chr6:+:31249866..31250736
Molecular Weight (calculated)
19758.0 Da
IEP (calculated)
4.984
GRAVY (calculated)
0.007
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSILSLS FFFFFFFSLL VTLSHAATFE IVNRCSYTVW AAAVPGGGRQ LNQGQSWTIN VNAGTTGGRI WGRTGCSFDG SGRGRCQTGD CGGVLSCTAY
101: GSPPNTLAEF ALNQFNNLDF FDISLVDGFN VPMDFSPTSG GCRGIRCAAD INGQNCPDAY SYPKDDQTST FTCPGGTNYR VVFCP
101: GSPPNTLAEF ALNQFNNLDF FDISLVDGFN VPMDFSPTSG GCRGIRCAAD INGQNCPDAY SYPKDDQTST FTCPGGTNYR VVFCP
001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN
Arabidopsis Description
OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.