Factsheet for TraesCS4D01G015800.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G017300.1	Wheat	cytosol, mitochondrion	67.81	91.33
TraesCS4A01G296300.1	Wheat	extracellular, unclear	88.84	90.39
HORVU4Hr1G002650.2	Barley	extracellular	91.85	83.92
OQU91235	Sorghum	extracellular	77.25	77.92
Zm00001d033455_P001	Maize	extracellular	76.39	77.39
TraesCS4D01G015600.1	Wheat	extracellular	77.68	77.02
VIT_02s0025g04250.t01	Wine grape	extracellular	63.95	66.22
GSMUA_Achr6P31470_001	Banana	endoplasmic reticulum, extracellular	52.36	65.95
VIT_02s0025g04270.t01	Wine grape	extracellular	63.52	65.78
VIT_02s0025g04230.t01	Wine grape	extracellular	63.09	65.33
VIT_02s0025g04260.t01	Wine grape	extracellular	47.64	63.79
VIT_02s0025g04310.t01	Wine grape	extracellular	60.52	62.67
VIT_02s0025g04300.t01	Wine grape	extracellular	60.52	62.67
Os03t0661600-01	Rice	extracellular	74.68	61.92
KRH59832	Soybean	extracellular	58.8	61.71
KRH59826	Soybean	extracellular	59.23	61.61
PGSC0003DMT400010892	Potato	cytosol	33.48	60.47
GSMUA_Achr6P31500_001	Banana	endoplasmic reticulum, extracellular	35.19	60.29
VIT_02s0025g04290.t01	Wine grape	extracellular	57.94	60.27
Solyc12g056390.1.1	Tomato	extracellular	57.94	59.47
PGSC0003DMT400010886	Potato	cytosol	57.08	58.59
VIT_02s0025g04280.t01	Wine grape	extracellular	58.8	57.81
PGSC0003DMT400010887	Potato	cytosol, mitochondrion, nucleus	40.34	55.29
KRH77506	Soybean	extracellular	52.79	55.16
KRH27960	Soybean	endoplasmic reticulum, extracellular	52.36	54.46
CDY41250	Canola	extracellular	52.79	53.25
Bra013674.1-P	Field mustard	extracellular	52.79	53.25
PGSC0003DMT400010891	Potato	cytosol	49.36	53.24
TraesCS7D01G551400.1	Wheat	extracellular	38.63	52.02
Solyc12g056360.1.1	Tomato	extracellular	50.21	51.09
CDY53136	Canola	extracellular	50.64	51.08
Solyc12g056380.1.1	Tomato	extracellular	45.92	46.72
PGSC0003DMT400010888	Potato	extracellular	27.04	44.68
TraesCS3D01G224300.1	Wheat	endoplasmic reticulum, extracellular	30.47	38.59
Solyc12g056370.1.1	Tomato	cytosol	33.91	33.76
PGSC0003DMT400010890	Potato	extracellular	57.94	31.69

Protein Annotations

EnsemblPlants:TraesCS4D01G015800.1	EnsemblPlantsGene:TraesCS4D01G015800	Gene3D:2.60.110.10	InterPro:IPR001938	InterPro:IPR037176	InterPro:Osmotin/thaumatin-like_sf
InterPro:Thaumatin	InterPro:Thaumatin_CS	PANTHER:PTHR31048	PANTHER:PTHR31048:SF47	PFAM:PF00314	PFscan:PS51367
PIRSF:PIRSF002703	PRINTS:PR00347	ScanProsite:PS00316	SEG:seg	SignalP:SignalP-noTM	SMART:SM00205
SUPFAM:SSF49870	TMHMM:TMhelix	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr4D:+:7035353..7036054

Molecular Weight (calculated)

24403.8 Da

IEP (calculated)

6.202

GRAVY (calculated)

-0.101

Length

233 amino acids

Sequence
(BLAST)

001: MASLPSSSVL LPVLILILVA AATDAATFTV INKCQYTVWA AAVPAGGGRQ LDAGQTWSIN VPAGTTGGRV WARTGCSFDG AGNGRCQTGD CGGKLQCTQY
101: GQAPNTLAEF GLNKYMNLDF FDISLIDGYN VPMSFLPAPG SPGCPKGGPQ CPRVITPQCP NELRAAGGCN NACTVFKEDR YCCTGSAANN CGPTDYSRFF
201: KGQCSDAYSY PKDDATSTYT CPGGTNYQVI FCP

Best Arabidopsis Sequence Match ( AT4G11650.1 )
(BLAST)

001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN

Arabidopsis Description

OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.