Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 7
- plasma membrane 5
- golgi 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
30448023
|
msms PMID:
30448023
doi
Department of Plant Biology, Faculty of Biology, University of Murcia, Campus de Espinardo, E-30100, Murcia, Spain., Department of Plant Biology, Faculty of Biology, University of Murcia, Campus de Espinardo, E-30100, Murcia, Spain. Electronic address: lorena.almagro@um.es., Plant Proteomics and Functional Genomics Group, Department of Agrochemistry and Biochemistry, Faculty of Science, University of Alicante and Instituto de Investigación Sanitaria y Biomédica de Alicante ISABIAL-FISABIO, Alicante, Spain.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_02s0025g04310.t01 | Wine grape | extracellular | 95.56 | 95.56 |
| VIT_02s0025g04280.t01 | Wine grape | extracellular | 92.0 | 87.34 |
| VIT_02s0025g04260.t01 | Wine grape | extracellular | 64.0 | 82.76 |
| VIT_02s0025g04230.t01 | Wine grape | extracellular | 82.67 | 82.67 |
| VIT_02s0025g04270.t01 | Wine grape | extracellular | 82.22 | 82.22 |
| VIT_02s0025g04250.t01 | Wine grape | extracellular | 79.56 | 79.56 |
| VIT_02s0025g04290.t01 | Wine grape | extracellular | 78.67 | 79.02 |
| KRH59832 | Soybean | extracellular | 73.78 | 74.77 |
| GSMUA_Achr6P31470_001 | Banana | endoplasmic reticulum, extracellular | 59.56 | 72.43 |
| GSMUA_Achr6P31500_001 | Banana | endoplasmic reticulum, extracellular | 43.11 | 71.32 |
| KRH59826 | Soybean | extracellular | 70.67 | 70.98 |
| GSMUA_Achr7P16510_001 | Banana | endoplasmic reticulum, extracellular | 57.33 | 70.88 |
| VIT_02s0025g04320.t01 | Wine grape | cytosol | 28.89 | 69.15 |
| GSMUA_Achr4P31970_001 | Banana | extracellular | 54.22 | 68.93 |
| VIT_02s0025g04330.t01 | Wine grape | extracellular | 67.11 | 68.02 |
| Os03t0663500-00 | Rice | extracellular | 64.89 | 66.67 |
| OQU91235 | Sorghum | extracellular | 67.11 | 65.37 |
| Zm00001d033455_P001 | Maize | extracellular | 64.0 | 62.61 |
| KRH77506 | Soybean | extracellular | 60.89 | 61.44 |
| KRH27960 | Soybean | endoplasmic reticulum, extracellular | 60.44 | 60.71 |
| TraesCS4B01G017300.1 | Wheat | cytosol, mitochondrion | 46.67 | 60.69 |
| TraesCS4D01G015800.1 | Wheat | unclear | 62.67 | 60.52 |
| HORVU4Hr1G002640.1 | Barley | cytosol | 26.22 | 60.2 |
| TraesCS4D01G015600.1 | Wheat | extracellular | 62.22 | 59.57 |
| TraesCS4A01G296300.1 | Wheat | extracellular, unclear | 60.44 | 59.39 |
| Zm00001d021901_P001 | Maize | extracellular | 59.11 | 58.59 |
| EER99598 | Sorghum | endoplasmic reticulum, extracellular | 59.11 | 57.08 |
| VIT_02s0025g04340.t01 | Wine grape | endoplasmic reticulum, extracellular, plastid | 66.22 | 56.87 |
| GSMUA_Achr9P26190_001 | Banana | extracellular | 51.56 | 56.86 |
| TraesCS4A01G296400.1 | Wheat | cytosol | 25.33 | 56.44 |
| HORVU4Hr1G002650.2 | Barley | extracellular | 60.44 | 53.33 |
| Os03t0661600-01 | Rice | extracellular | 64.0 | 51.25 |
Protein Annotations
| EntrezGene:100242737 | wikigene:100242737 | Gene3D:2.60.110.10 | MapMan:35.1 | UniProt:A5C9F1 | EMBL:AM486918 |
| ProteinID:CAA71883 | ProteinID:CAA71883.1 | ProteinID:CAN66515 | ProteinID:CAN66515.1 | ProteinID:CCB58391 | ProteinID:CCB58391.1 |
| EMBL:FN596251 | InterPro:IPR001938 | InterPro:IPR037176 | EntrezGene:LOC100242737 | wikigene:LOC100242737 | InterPro:Osmotin/thaumatin-like_sf |
| PFAM:PF00314 | PIRSF:PIRSF002703 | PRINTS:PR00347 | ScanProsite:PS00316 | PFscan:PS51367 | PANTHER:PTHR31048 |
| PANTHER:PTHR31048:SF36 | SMART:SM00205 | SUPFAM:SSF49870 | SignalP:SignalP-noTM | TMHMM:TMhelix | InterPro:Thaumatin |
| InterPro:Thaumatin_CS | UniParc:UPI000152268A | ArrayExpress:VIT_02s0025g04300 | EnsemblPlantsGene:VIT_02s0025g04300 | EnsemblPlants:VIT_02s0025g04300.t01 | RefSeq:XP_002282988 |
| RefSeq:XP_002282988.1 | EMBL:Y10992 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2:+:3808937..3809791
Molecular Weight (calculated)
23881.8 Da
IEP (calculated)
4.340
GRAVY (calculated)
-0.059
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLCKILSIS SFLLTTLFFT SSYAATFNIQ NHCSYTVWAA AVPGGGMQLG SGQSWSLNVN AGTTGGRVWA RTNCNFDASG NGKCETGDCG GLLQCTAYGT
101: PPNTLAEFAL NQYSNLDFFD ISLVDGFNVA MAFNPTSNGC TRGISCTADI VGECPAALKT TGGCNNPCTV FKTDEYCCNS GSCNATTYSE FFKTRCPDAY
201: SYPKDDQTST FTCPSGTNYE VIFCP
101: PPNTLAEFAL NQYSNLDFFD ISLVDGFNVA MAFNPTSNGC TRGISCTADI VGECPAALKT TGGCNNPCTV FKTDEYCCNS GSCNATTYSE FFKTRCPDAY
201: SYPKDDQTST FTCPSGTNYE VIFCP
001: MAKISSIHIL FFVFITSGIA DSATVFTLQN SCAYTVWPGT LSGNSITLGD GGFPLTPGAS VQLTAPTGWS GRFWARTGCN FDASGHGTCV TGDCGGVLKC
101: TGGGVPPATL AEFTVGSSNA GMDFYDVSLV DGYNVKMGIK PQGGFGNCKY AGCVSDINEI CPSELRIMDP NSGSVAACKS ACAAFSSPEF CCTGAHATPQ
201: TCSPTYYSSM FKNACPSAYS YAYDDASSTF TCTGSNYLIT FCPTQS
101: TGGGVPPATL AEFTVGSSNA GMDFYDVSLV DGYNVKMGIK PQGGFGNCKY AGCVSDINEI CPSELRIMDP NSGSVAACKS ACAAFSSPEF CCTGAHATPQ
201: TCSPTYYSSM FKNACPSAYS YAYDDASSTF TCTGSNYLIT FCPTQS
Arabidopsis Description
ATLP-3At1g75030 [Source:UniProtKB/TrEMBL;Acc:Q9C9P9]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.