Factsheet for VIT_02s0025g04330.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g056390.1.1	Tomato	extracellular	78.83	77.09
PGSC0003DMT400010886	Potato	cytosol	77.93	76.21
VIT_02s0025g04320.t01	Wine grape	cytosol	30.18	71.28
VIT_02s0025g04230.t01	Wine grape	extracellular	70.72	69.78
VIT_02s0025g04270.t01	Wine grape	extracellular	70.72	69.78
VIT_02s0025g04260.t01	Wine grape	extracellular	54.05	68.97
VIT_02s0025g04290.t01	Wine grape	extracellular	68.47	67.86
VIT_02s0025g04250.t01	Wine grape	extracellular	68.47	67.56
VIT_02s0025g04300.t01	Wine grape	extracellular	68.02	67.11
VIT_02s0025g04310.t01	Wine grape	extracellular	66.67	65.78
VIT_02s0025g04280.t01	Wine grape	extracellular	66.22	62.03
VIT_02s0025g04340.t01	Wine grape	endoplasmic reticulum, extracellular, plastid	70.27	59.54
CDY41250	Canola	extracellular	61.71	59.31
Bra013674.1-P	Field mustard	extracellular	61.71	59.31
CDY53136	Canola	extracellular	59.46	57.14
Solyc12g056370.1.1	Tomato	cytosol	43.24	41.03
PGSC0003DMT400010890	Potato	extracellular	76.58	39.91

Protein Annotations

EntrezGene:100232841	wikigene:100232841	Gene3D:2.60.110.10	MapMan:35.1	PDB:4L5H	ProteinID:AAB61590
ProteinID:AAB61590.1	ProteinID:AAF82264	ProteinID:AAF82264.1	EMBL:AF003007	EMBL:AF227324	EMBL:AJ237999
ProteinID:CAB85637	ProteinID:CAB85637.1	ProteinID:CCB58394	ProteinID:CCB58394.1	UniProt:F6HUH1	EMBL:FN596251
InterPro:IPR001938	InterPro:IPR037176	InterPro:Osmotin/thaumatin-like_sf	PFAM:PF00314	PIRSF:PIRSF002703	PRINTS:PR00347
ScanProsite:PS00316	PFscan:PS51367	PANTHER:PTHR31048	PANTHER:PTHR31048:SF44	SMART:SM00205	SUPFAM:SSF49870
SignalP:SignalP-noTM	TIGR:TC63167	EntrezGene:TL1	wikigene:TL1	InterPro:Thaumatin	InterPro:Thaumatin_CS
UniParc:UPI00015CD353	ArrayExpress:VIT_02s0025g04330	EnsemblPlantsGene:VIT_02s0025g04330	EnsemblPlants:VIT_02s0025g04330.t01	unigene:Vvi.9248	SEG:seg

Description

No Description!

Coordinates

chr2:+:3821899..3822797

Molecular Weight (calculated)

24004.2 Da

IEP (calculated)

4.894

GRAVY (calculated)

-0.268

Length

222 amino acids

Sequence
(BLAST)

001: MRFTTTLPIL FPLLLSLLFT STHAATFDIL NKCTYTVWAA ASPGGGRRLD SGQSWTITVN PGTTNARIWG RTSCTFDANG RGKCETGDCN GLLECQGYGS
101: PPNTLAEFAL NQPNNLDYID ISLVDGFNIP MDFSGCRGIQ CSVDINGQCP SELKAPGGCN NPCTVFKTNE YCCTDGPGSC GPTTYSKFFK DRCPDAYSYP
201: QDDKTSLFTC PSGTNYKVTF CP

Best Arabidopsis Sequence Match ( AT4G11650.1 )
(BLAST)

001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN

Arabidopsis Description

OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.