Factsheet for VIT_02s0025g04270.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 23391302
extracellular: 27664331

msms PMID: 23391302 doi

B Delaunois, T Colby, N Belloy, A Conreux, A Harzen, F Baillieul, C Clément, J Schmidt, P Jeandet, S Cordelier

Université de Reims Champagne-Ardenne, UFR Sciences Exactes et Naturelles, Unité de Recherche Vigne et Vins de Champagne - EA 4707, Laboratoire de Stress, Défenses et Reproduction des Plantes, B,P, 1039, Reims, cedex 02, 51687, France.

msms PMID: 27664331 doi

P Pérez-Bermúdez, J Blesa, JM Soriano, A Marcilla

Departament de Biologia Vegetal, Facultat de Farmàcia, Universitat de València, Burjassot, Valencia, Spain., Grupo de Ciencias de la Alimentación Basada en la Evidencia y Experimentación (CiAlBEx), Instituto de Ciencias de los Materiales, Parque Científico, Universitat de València, Paterna, Spain; Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain., Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain; Àrea de Parasitologia, Departament de Farmàcia i Tecnologia Farmacèutica i Parasitologia, Universitat de València, Burjassot, Valencia, Spain. Electronic address: antonio.marcilla@uv.es.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g04230.t01	Wine grape	extracellular	98.67	98.67
VIT_02s0025g04250.t01	Wine grape	extracellular	95.11	95.11
VIT_02s0025g04260.t01	Wine grape	extracellular	73.33	94.83
VIT_02s0025g04310.t01	Wine grape	extracellular	82.22	82.22
VIT_02s0025g04300.t01	Wine grape	extracellular	82.22	82.22
VIT_02s0025g04290.t01	Wine grape	extracellular	79.56	79.91
KRH59832	Soybean	extracellular	77.78	78.83
VIT_02s0025g04280.t01	Wine grape	extracellular	81.33	77.22
GSMUA_Achr6P31470_001	Banana	endoplasmic reticulum, extracellular	63.11	76.76
KRH59826	Soybean	extracellular	74.67	75.0
GSMUA_Achr7P16510_001	Banana	endoplasmic reticulum, extracellular	58.22	71.98
GSMUA_Achr6P31500_001	Banana	endoplasmic reticulum, extracellular	43.11	71.32
VIT_02s0025g04330.t01	Wine grape	extracellular	69.78	70.72
GSMUA_Achr4P31970_001	Banana	extracellular	55.56	70.62
Os03t0663500-00	Rice	extracellular	67.56	69.41
VIT_02s0025g04320.t01	Wine grape	cytosol	28.89	69.15
TraesCS4B01G017300.1	Wheat	cytosol, mitochondrion	50.67	65.9
OQU91235	Sorghum	extracellular	66.67	64.94
Zm00001d033455_P001	Maize	extracellular	65.78	64.35
HORVU4Hr1G002640.1	Barley	cytosol	28.0	64.29
TraesCS4A01G296300.1	Wheat	extracellular, unclear	65.33	64.19
KRH77506	Soybean	extracellular	63.56	64.13
KRH27960	Soybean	endoplasmic reticulum, extracellular	63.56	63.84
TraesCS4D01G015800.1	Wheat	unclear	65.78	63.52
EER99598	Sorghum	endoplasmic reticulum, extracellular	65.78	63.52
Zm00001d021901_P001	Maize	extracellular	63.56	63.0
TraesCS4A01G296400.1	Wheat	cytosol	28.0	62.38
TraesCS4D01G015600.1	Wheat	extracellular	64.44	61.7
GSMUA_Achr9P26190_001	Banana	extracellular	55.56	61.27
VIT_02s0025g04340.t01	Wine grape	endoplasmic reticulum, extracellular, plastid	69.78	59.92
HORVU4Hr1G002650.2	Barley	extracellular	63.56	56.08
Os03t0661600-01	Rice	extracellular	65.78	52.67

Protein Annotations

EntrezGene:100259841	wikigene:100259841	Gene3D:2.60.110.10	MapMan:35.1	UniProt:A5AHJ5	EMBL:AM426942
EMBL:AM463275	ProteinID:CAN60240	ProteinID:CAN60240.1	ProteinID:CAN68052	ProteinID:CAN68052.1	ProteinID:CCB58388
ProteinID:CCB58388.1	EMBL:FN596251	InterPro:IPR001938	InterPro:IPR037176	EntrezGene:LOC100259841	wikigene:LOC100259841
InterPro:Osmotin/thaumatin-like_sf	PFAM:PF00314	PIRSF:PIRSF002703	PRINTS:PR00347	ScanProsite:PS00316	PFscan:PS51367
PANTHER:PTHR31048	PANTHER:PTHR31048:SF36	SMART:SM00205	SUPFAM:SSF49870	SignalP:SignalP-noTM	TIGR:TC63891
TMHMM:TMhelix	InterPro:Thaumatin	InterPro:Thaumatin_CS	UniParc:UPI000151E8A8	ArrayExpress:VIT_02s0025g04270	EnsemblPlantsGene:VIT_02s0025g04270
EnsemblPlants:VIT_02s0025g04270.t01	unigene:Vvi.24494	unigene:Vvi.24553	unigene:Vvi.892	RefSeq:XP_002283030	RefSeq:XP_002283030.1
RefSeq:XP_002283042	RefSeq:XP_002283042.1	RefSeq:XP_002283082	RefSeq:XP_002283082.1	SEG:seg	:

Description

No Description!

Coordinates

chr2:+:3796859..3797681

Molecular Weight (calculated)

24186.3 Da

IEP (calculated)

7.655

GRAVY (calculated)

-0.176

Length

225 amino acids

Sequence
(BLAST)

001: MGLFKSLSIS SFLLATLFFT SAHAAIFNIQ NHCSYTVWAA AVPGGGRRLD RGQSWSLTVN PGTTGARIWA RTGCSFDGAG RGRCQTGDCG GVLQCTAYGA
101: PPNTLAEFAL NQFNNLDFFD ISLVDGFNVP MAFNPTSNGC TRGIRCTADI VGQCPSQLRT QGGCNNPCTV FKTNEYCCNS GSCGPTDYSR YFKTRCPDAY
201: SYPKDDQTST FTCPGGTNYD VIFCP

Best Arabidopsis Sequence Match ( AT4G11650.1 )
(BLAST)

001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN

Arabidopsis Description

OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.