Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G296400.1 | Wheat | cytosol | 40.43 | 94.06 |
| HORVU4Hr1G002640.1 | Barley | cytosol | 37.02 | 88.78 |
| Os03t0663500-00 | Rice | extracellular | 76.17 | 81.74 |
| OQU91235 | Sorghum | extracellular | 79.15 | 80.52 |
| Zm00001d033455_P001 | Maize | extracellular | 77.87 | 79.57 |
| TraesCS4D01G015800.1 | Wheat | unclear | 77.02 | 77.68 |
| GSMUA_Achr6P31470_001 | Banana | endoplasmic reticulum, extracellular | 51.91 | 65.95 |
| KRH59826 | Soybean | extracellular | 62.55 | 65.62 |
| VIT_02s0025g04270.t01 | Wine grape | extracellular | 61.7 | 64.44 |
| KRH59832 | Soybean | extracellular | 60.85 | 64.41 |
| VIT_02s0025g04230.t01 | Wine grape | extracellular | 61.28 | 64.0 |
| GSMUA_Achr6P31500_001 | Banana | endoplasmic reticulum, extracellular | 37.02 | 63.97 |
| VIT_02s0025g04250.t01 | Wine grape | extracellular | 60.85 | 63.56 |
| VIT_02s0025g04310.t01 | Wine grape | extracellular | 60.43 | 63.11 |
| VIT_02s0025g04300.t01 | Wine grape | extracellular | 59.57 | 62.22 |
| VIT_02s0025g04260.t01 | Wine grape | extracellular | 45.96 | 62.07 |
| PGSC0003DMT400010892 | Potato | cytosol | 34.04 | 62.02 |
| Solyc12g056390.1.1 | Tomato | extracellular | 59.15 | 61.23 |
| VIT_02s0025g04290.t01 | Wine grape | extracellular | 58.3 | 61.16 |
| PGSC0003DMT400010886 | Potato | cytosol | 58.3 | 60.35 |
| PGSC0003DMT400010887 | Potato | cytosol, mitochondrion, nucleus | 41.7 | 57.65 |
| VIT_02s0025g04280.t01 | Wine grape | extracellular | 57.45 | 56.96 |
| KRH77506 | Soybean | extracellular | 53.62 | 56.5 |
| Bra013674.1-P | Field mustard | extracellular | 55.32 | 56.28 |
| KRH27960 | Soybean | endoplasmic reticulum, extracellular | 53.62 | 56.25 |
| Solyc12g056360.1.1 | Tomato | extracellular | 54.04 | 55.46 |
| PGSC0003DMT400010891 | Potato | cytosol | 50.64 | 55.09 |
| CDY41250 | Canola | extracellular | 53.62 | 54.55 |
| CDY53136 | Canola | extracellular | 52.77 | 53.68 |
| TraesCS7D01G551400.1 | Wheat | extracellular | 37.87 | 51.45 |
| Solyc12g056380.1.1 | Tomato | extracellular | 48.09 | 49.34 |
| PGSC0003DMT400010888 | Potato | extracellular | 27.23 | 45.39 |
| TraesCS3D01G224300.1 | Wheat | endoplasmic reticulum, extracellular | 34.04 | 43.48 |
| Solyc12g056370.1.1 | Tomato | cytosol | 34.89 | 35.04 |
| PGSC0003DMT400010890 | Potato | extracellular | 60.85 | 33.57 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G015600.1 | EnsemblPlantsGene:TraesCS4D01G015600 | Gene3D:2.60.110.10 | InterPro:IPR001938 | InterPro:IPR037176 | InterPro:Osmotin/thaumatin-like_sf |
| InterPro:Thaumatin | InterPro:Thaumatin_CS | PANTHER:PTHR31048 | PANTHER:PTHR31048:SF47 | PFAM:PF00314 | PFscan:PS51367 |
| PIRSF:PIRSF002703 | PRINTS:PR00347 | ScanProsite:PS00316 | SignalP:SignalP-noTM | SMART:SM00205 | SUPFAM:SSF49870 |
| TMHMM:TMhelix | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:6981775..6982482
Molecular Weight (calculated)
24425.6 Da
IEP (calculated)
4.557
GRAVY (calculated)
-0.084
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLAAASRV VLHILPLFLL AAGTHAATFT ITNKCQFTVW AAAVPSGGGK QLDPGAQPWS IEVPAGTTGG RVWARTGCNF DGSGNGQCQT GDCGGVLQCT
101: GYGQAPNTLA EFGLNKYMGQ DFIDISVIDG FNVPMDFLPA DGTAGCAKGG PRCDADITSQ CPSELRAPGG CNNACTVFKK DEYCCTGTAA DNCGPTDYSR
201: FFKGQCPDAY SYPKDDATSI FTCPGGTNYQ VVFCP
101: GYGQAPNTLA EFGLNKYMGQ DFIDISVIDG FNVPMDFLPA DGTAGCAKGG PRCDADITSQ CPSELRAPGG CNNACTVFKK DEYCCTGTAA DNCGPTDYSR
201: FFKGQCPDAY SYPKDDATSI FTCPGGTNYQ VVFCP
001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN
Arabidopsis Description
OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.