Factsheet for TraesCS5A01G018100.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G016200.1	Wheat	extracellular	92.0	90.79
HORVU5Hr1G005190.1	Barley	extracellular	90.67	90.27
TraesCS5A01G018400.1	Wheat	extracellular	66.22	74.5
TraesCS5A01G017900.1	Wheat	golgi	60.44	60.44
Zm00001d043121_P001	Maize	extracellular	57.78	59.09
EES01640	Sorghum	extracellular	60.0	58.95
TraesCS5A01G018000.1	Wheat	extracellular	58.67	56.17
TraesCS4A01G296400.1	Wheat	cytosol	24.0	53.47
TraesCS4A01G296300.1	Wheat	extracellular, unclear	54.22	53.28
TraesCS5A01G018200.1	Wheat	endoplasmic reticulum, extracellular	38.22	50.29
TraesCS5A01G018300.1	Wheat	extracellular	38.22	50.29
TraesCS7A01G558500.1	Wheat	extracellular	38.67	50.29
TraesCS4A01G498000.1	Wheat	extracellular	39.11	50.0
TraesCS2A01G110300.1	Wheat	extracellular	39.11	50.0
TraesCS3A01G226300.1	Wheat	endoplasmic reticulum, extracellular	34.67	42.39
TraesCS5A01G018500.1	Wheat	extracellular	32.0	40.0
TraesCS5A01G019500.1	Wheat	endoplasmic reticulum, extracellular	32.0	39.13

Protein Annotations

EnsemblPlants:TraesCS5A01G018100.1	EnsemblPlantsGene:TraesCS5A01G018100	Gene3D:2.60.110.10	InterPro:IPR001938	InterPro:IPR037176	InterPro:Osmotin/thaumatin-like_sf
InterPro:Thaumatin	InterPro:Thaumatin_CS	PANTHER:PTHR31048	PANTHER:PTHR31048:SF42	PFAM:PF00314	PFscan:PS51367
PIRSF:PIRSF002703	PRINTS:PR00347	ScanProsite:PS00316	SEG:seg	SignalP:SignalP-noTM	SMART:SM00205
SUPFAM:SSF49870	TIGR:cd09218	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr5A:-:14254486..14255163

Molecular Weight (calculated)

22948.1 Da

IEP (calculated)

5.529

GRAVY (calculated)

0.112

Length

225 amino acids

Sequence
(BLAST)

001: MASSLSFILA LLLAIAATDA VTVHLLNKCP YTVWPGAVPV GGGSRLDPGQ VAAIQVPPGT AAGRIWGRTG CNFDASGHGS CATGDCGGVL ACAAGGKPPT
101: TLAEYTLGKG GSPDFYDISL VDGFNVPMSF GPTGGSCHAI SCAADINAKC PPELKVDGGC SSACLKFGTP QYCCTPPLTP STCGPTDYSR FFKGHCPDAY
201: SYAYDDKSST FTCPVGSDYQ LTFCP

Best Arabidopsis Sequence Match ( AT4G11650.1 )
(BLAST)

001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN

Arabidopsis Description

OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.