Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G018100.1 | Wheat | unclear | 90.79 | 92.0 |
| HORVU5Hr1G005190.1 | Barley | extracellular | 87.72 | 88.5 |
| TraesCS5B01G015600.1 | Wheat | golgi | 84.21 | 85.71 |
| TraesCS5B01G015900.1 | Wheat | cytosol, extracellular, nucleus | 60.96 | 84.24 |
| TraesCS5B01G016300.1 | Wheat | unclear | 75.44 | 76.79 |
| TraesCS7B01G417700.1 | Wheat | extracellular | 59.65 | 60.44 |
| TraesCS5B01G015500.1 | Wheat | golgi | 57.89 | 58.67 |
| Zm00001d043121_P001 | Maize | extracellular | 56.14 | 58.18 |
| EES01640 | Sorghum | extracellular | 58.33 | 58.08 |
| TraesCS5B01G015700.1 | Wheat | golgi | 58.77 | 57.02 |
| TraesCS5B01G016100.1 | Wheat | unclear | 59.21 | 52.53 |
| TraesCS4B01G017300.1 | Wheat | cytosol, mitochondrion | 39.47 | 52.02 |
| TraesCS5B01G015800.1 | Wheat | mitochondrion | 40.35 | 51.11 |
| TraesCS7B01G483400.1 | Wheat | extracellular | 38.16 | 50.29 |
| TraesCS6B01G473800.1 | Wheat | extracellular | 37.28 | 48.3 |
| TraesCS5B01G016000.1 | Wheat | extracellular, unclear | 59.65 | 43.87 |
| TraesCS3B01G258200.1 | Wheat | endoplasmic reticulum, extracellular | 33.77 | 41.85 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G016200.1 | EnsemblPlantsGene:TraesCS5B01G016200 | Gene3D:2.60.110.10 | InterPro:IPR001938 | InterPro:IPR037176 | InterPro:Osmotin/thaumatin-like_sf |
| InterPro:Thaumatin | InterPro:Thaumatin_CS | PANTHER:PTHR31048 | PANTHER:PTHR31048:SF42 | PFAM:PF00314 | PFscan:PS51367 |
| PIRSF:PIRSF002703 | PRINTS:PR00347 | ScanProsite:PS00316 | SEG:seg | SignalP:SignalP-noTM | SMART:SM00205 |
| SUPFAM:SSF49870 | TIGR:cd09218 | TMHMM:TMhelix | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr5B:-:15191301..15191987
Molecular Weight (calculated)
23425.8 Da
IEP (calculated)
6.666
GRAVY (calculated)
0.019
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MATMASSLSF ILALLLAIAA TDGITVHLLN KCPYTVWPGA YPVGGGSRLD PGQAGAIQVP PGTAGGRIWG RTGCNFDASG RGSCTTGDCG GMLACAAGGK
101: PPATLAEYTL GKGGSPDFYD VSLVDGFNMP MSFGPTGGSC HAINCAADIN AKCPSELKVD GGCVSACVKF GTPQYCCKPP LRPSTCGPTD YSRFFKGHCP
201: DAYSYAYDDK SSTFTCPVGS DYQLTFCP
101: PPATLAEYTL GKGGSPDFYD VSLVDGFNMP MSFGPTGGSC HAINCAADIN AKCPSELKVD GGCVSACVKF GTPQYCCKPP LRPSTCGPTD YSRFFKGHCP
201: DAYSYAYDDK SSTFTCPVGS DYQLTFCP
001: MAIFSTSHLL FISFIIATCT ISVSGTTFTL TNHCGSTIWP GILTANGAQL GDGGFALASG SSVTFTVSPG WSGRFWARTY CNFDASGSGK CGTGDCGSKL
101: KCAGAGGAPP ATLAEFTIGS SGKKNAVQDF YDVSLVDGYN VQMKITPQGG SGDCKTAGCV SDVNAICPKE LQVTGPSGVA ACKSACEAFN KPEYCCTGAY
201: STPATCPPTN YSKIFKQACP SAYSYAYDDA SSTFTCTNAN YEISFCS
101: KCAGAGGAPP ATLAEFTIGS SGKKNAVQDF YDVSLVDGYN VQMKITPQGG SGDCKTAGCV SDVNAICPKE LQVTGPSGVA ACKSACEAFN KPEYCCTGAY
201: STPATCPPTN YSKIFKQACP SAYSYAYDDA SSTFTCTNAN YEISFCS
Arabidopsis Description
At1g19320 [Source:UniProtKB/TrEMBL;Acc:Q9LN66]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.