Factsheet for TraesCS5B01G016100.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 4
endoplasmic reticulum 2
extracellular 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	endoplasmic reticulum, extracellular, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	extracellular

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G015700.1	Wheat	golgi	88.72	97.02
TraesCS5A01G018000.1	Wheat	extracellular	87.16	95.32
TraesCS7B01G417700.1	Wheat	extracellular	75.88	86.67
TraesCS5B01G015500.1	Wheat	golgi	75.49	86.22
HORVU5Hr1G005180.1	Barley	extracellular	84.82	72.67
TraesCS5B01G016000.1	Wheat	extracellular, unclear	86.77	71.94
TraesCS5B01G015800.1	Wheat	mitochondrion	49.81	71.11
Os12t0630200-01	Rice	extracellular	61.87	66.81
Zm00001d043121_P001	Maize	extracellular	56.03	65.45
EES01640	Sorghum	extracellular	56.03	62.88
TraesCS5B01G016300.1	Wheat	unclear	54.09	62.05
TraesCS5B01G016200.1	Wheat	extracellular	52.53	59.21
HORVU5Hr1G005510.1	Barley	extracellular, mitochondrion, plastid	17.9	58.23
TraesCS5B01G015900.1	Wheat	cytosol, extracellular, nucleus	36.19	56.36
TraesCS4B01G017300.1	Wheat	cytosol, mitochondrion	37.35	55.49
TraesCS5B01G015600.1	Wheat	golgi	47.47	54.46
HORVU5Hr1G051950.1	Barley	extracellular	38.13	52.41
TraesCS7B01G483400.1	Wheat	extracellular	32.68	48.55
TraesCS6B01G473800.1	Wheat	extracellular	31.91	46.59
TraesCS3B01G258200.1	Wheat	endoplasmic reticulum, extracellular	28.02	39.13

Protein Annotations

EnsemblPlants:TraesCS5B01G016100.1	EnsemblPlantsGene:TraesCS5B01G016100	Gene3D:2.60.110.10	InterPro:IPR001938	InterPro:IPR037176	InterPro:Osmotin/thaumatin-like_sf
InterPro:Thaumatin	InterPro:Thaumatin_CS	PANTHER:PTHR31048	PANTHER:PTHR31048:SF42	PFAM:PF00314	PFscan:PS51367
PIRSF:PIRSF002703	PRINTS:PR00347	ScanProsite:PS00316	SEG:seg	SMART:SM00205	SUPFAM:SSF49870
TMHMM:TMhelix	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:15186319..15187092

Molecular Weight (calculated)

26929.8 Da

IEP (calculated)

6.723

GRAVY (calculated)

-0.054

Length

257 amino acids

Sequence
(BLAST)

001: MDASAINTSV ATPPNHHSTA AAMTSSLILH LIALVLVLVA AAKATTITVV NRCSYTIWPG ALPGGGARLD PGQSWQLNMP AGTAGARVWP RTGCTFDGSG
101: RGHCITGDCA GALSCRVSGE QPATLAEYTL GRGGSQDFFD LSVIDGFNTP MSFQPVAGAP CRAATCAVDI TRECLPELQV PGGCASACGK FGGDTYCCRG
201: QFEHNCPPTN YSRFFKGKCP DAYSYAKDDQ TSTFTCPAGT NYQIVLCPAR NDLHMDQ

Best Arabidopsis Sequence Match ( AT1G75030.1 )
(BLAST)

001: MAKISSIHIL FFVFITSGIA DSATVFTLQN SCAYTVWPGT LSGNSITLGD GGFPLTPGAS VQLTAPTGWS GRFWARTGCN FDASGHGTCV TGDCGGVLKC
101: TGGGVPPATL AEFTVGSSNA GMDFYDVSLV DGYNVKMGIK PQGGFGNCKY AGCVSDINEI CPSELRIMDP NSGSVAACKS ACAAFSSPEF CCTGAHATPQ
201: TCSPTYYSSM FKNACPSAYS YAYDDASSTF TCTGSNYLIT FCPTQS

Arabidopsis Description

ATLP-3At1g75030 [Source:UniProtKB/TrEMBL;Acc:Q9C9P9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.