Factsheet for TraesCS5B01G015700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G018000.1	Wheat	extracellular	96.17	96.17
TraesCS5B01G016100.1	Wheat	unclear	97.02	88.72
TraesCS7B01G417700.1	Wheat	extracellular	84.68	88.44
TraesCS5B01G015500.1	Wheat	golgi	84.68	88.44
HORVU5Hr1G005180.1	Barley	extracellular	92.34	72.33
TraesCS5B01G015800.1	Wheat	mitochondrion	54.47	71.11
TraesCS5B01G016000.1	Wheat	extracellular, unclear	92.34	70.0
Os12t0630200-01	Rice	extracellular	69.79	68.91
Zm00001d043121_P001	Maize	extracellular	60.85	65.0
TraesCS5B01G016300.1	Wheat	unclear	59.15	62.05
EES01640	Sorghum	extracellular	60.43	62.01
TraesCS5B01G016200.1	Wheat	extracellular	57.02	58.77
TraesCS5B01G015900.1	Wheat	cytosol, extracellular, nucleus	39.57	56.36
TraesCS4B01G017300.1	Wheat	cytosol, mitochondrion	41.28	56.07
TraesCS5B01G015600.1	Wheat	golgi	51.91	54.46
HORVU5Hr1G005510.1	Barley	extracellular, mitochondrion, plastid	17.02	50.63
HORVU5Hr1G051950.1	Barley	extracellular	39.57	49.73
TraesCS7B01G483400.1	Wheat	extracellular	35.32	47.98
TraesCS6B01G473800.1	Wheat	extracellular	34.47	46.02
TraesCS3B01G258200.1	Wheat	endoplasmic reticulum, extracellular	30.21	38.59

Protein Annotations

EnsemblPlants:TraesCS5B01G015700.1	EnsemblPlantsGene:TraesCS5B01G015700	Gene3D:2.60.110.10	InterPro:IPR001938	InterPro:IPR037176	InterPro:Osmotin/thaumatin-like_sf
InterPro:Thaumatin	InterPro:Thaumatin_CS	PANTHER:PTHR31048	PANTHER:PTHR31048:SF42	PFAM:PF00314	PFscan:PS51367
PIRSF:PIRSF002703	PRINTS:PR00347	ScanProsite:PS00316	SEG:seg	SignalP:SignalP-noTM	SMART:SM00205
SUPFAM:SSF49870	TMHMM:TMhelix	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr5B:+:15054205..15054912

Molecular Weight (calculated)

24762.3 Da

IEP (calculated)

6.671

GRAVY (calculated)

-0.100

Length

235 amino acids

Sequence
(BLAST)

001: MTSSRILHLI ALVLAVVAAA EATTITVVNR CSYTIWPGAL PGGGARLDPG QSWQLNMPAG TAGARVWPRT GCTFDGSGRG RCITGDCAGA LSCRVSGEQP
101: ATLAEYTLGR GGSQDFFDLS VIDGFNTPMS FQPVGGAPCR AATCAVDITR ECLPELQVPG GCASACGKFG GDTYCCRGQF EHNCPPTNYS KFFKGKCPDA
201: YSYAKDDQTS TFTCPAGTNY QIVLCPARND LHMDQ

Best Arabidopsis Sequence Match ( AT1G75030.1 )
(BLAST)

001: MAKISSIHIL FFVFITSGIA DSATVFTLQN SCAYTVWPGT LSGNSITLGD GGFPLTPGAS VQLTAPTGWS GRFWARTGCN FDASGHGTCV TGDCGGVLKC
101: TGGGVPPATL AEFTVGSSNA GMDFYDVSLV DGYNVKMGIK PQGGFGNCKY AGCVSDINEI CPSELRIMDP NSGSVAACKS ACAAFSSPEF CCTGAHATPQ
201: TCSPTYYSSM FKNACPSAYS YAYDDASSTF TCTGSNYLIT FCPTQS

Arabidopsis Description

ATLP-3At1g75030 [Source:UniProtKB/TrEMBL;Acc:Q9C9P9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.