Factsheet for TraesCS5B01G016300.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G018400.1	Wheat	extracellular	82.59	92.5
HORVU5Hr1G005240.1	Barley	plastid	92.41	83.81
TraesCS5B01G015900.1	Wheat	cytosol, extracellular, nucleus	56.7	76.97
TraesCS5B01G016200.1	Wheat	extracellular	76.79	75.44
TraesCS5B01G015600.1	Wheat	golgi	73.21	73.21
TraesCS7B01G417700.1	Wheat	extracellular	63.39	63.11
TraesCS5B01G015500.1	Wheat	golgi	62.05	61.78
TraesCS5B01G015700.1	Wheat	golgi	62.05	59.15
Zm00001d043121_P001	Maize	extracellular	57.59	58.64
EES01640	Sorghum	extracellular	59.38	58.08
TraesCS4B01G017300.1	Wheat	cytosol, mitochondrion	42.41	54.91
TraesCS7B01G483400.1	Wheat	extracellular	41.96	54.34
TraesCS5B01G016100.1	Wheat	unclear	62.05	54.09
TraesCS5B01G015800.1	Wheat	mitochondrion	41.52	51.67
TraesCS6B01G473800.1	Wheat	extracellular	39.73	50.57
TraesCS5B01G016000.1	Wheat	extracellular, unclear	62.5	45.16
TraesCS3B01G258200.1	Wheat	endoplasmic reticulum, extracellular	35.27	42.93

Protein Annotations

EnsemblPlants:TraesCS5B01G016300.1	EnsemblPlantsGene:TraesCS5B01G016300	Gene3D:2.60.110.10	InterPro:IPR001938	InterPro:IPR037176	InterPro:Osmotin/thaumatin-like_sf
InterPro:Thaumatin	InterPro:Thaumatin_CS	PANTHER:PTHR31048	PANTHER:PTHR31048:SF42	PFAM:PF00314	PFscan:PS51367
PIRSF:PIRSF002703	PRINTS:PR00347	ScanProsite:PS00316	SEG:seg	SignalP:SignalP-noTM	SMART:SM00205
SUPFAM:SSF49870	TIGR:cd09218	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr5B:+:15197076..15197750

Molecular Weight (calculated)

22913.2 Da

IEP (calculated)

7.834

GRAVY (calculated)

0.075

Length

224 amino acids

Sequence
(BLAST)

001: MASSLFILAL LLTVAATNAA TITVVNKCSY TVWPAAIPVG GGTKLEPGQL STIHPPAGTK SGRIWARTGC KFDASGKGSC TTGDCGGVLA CRAGGKPPAS
101: LAEYTLGTGS NADFYDISLV DGFNVPMSFG PVGGSCRAVS CAADINAKCP SELKVDGGCM SACGKFGTAQ YCCPPPSTPS TCGPTNYSRF FKGLCPDAYS
201: YAYDDKTSTF TCASGTNYQL TFCP

Best Arabidopsis Sequence Match ( AT4G11650.1 )
(BLAST)

001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN

Arabidopsis Description

OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.