Factsheet for TraesCS5B01G015500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G017900.1	Wheat	golgi	96.0	96.0
TraesCS7B01G417700.1	Wheat	extracellular	95.56	95.56
HORVU5Hr1G051970.4	Barley	extracellular	92.89	85.31
TraesCS5B01G015700.1	Wheat	golgi	88.44	84.68
TraesCS5B01G016100.1	Wheat	unclear	86.22	75.49
Os12t0630200-01	Rice	extracellular	73.78	69.75
Zm00001d043121_P001	Maize	extracellular	65.78	67.27
TraesCS5B01G016000.1	Wheat	extracellular, unclear	92.0	66.77
EES01640	Sorghum	extracellular	66.22	65.07
TraesCS5B01G015800.1	Wheat	mitochondrion	50.67	63.33
TraesCS5B01G016300.1	Wheat	unclear	61.78	62.05
TraesCS5B01G016200.1	Wheat	extracellular	58.67	57.89
TraesCS4B01G017300.1	Wheat	cytosol, mitochondrion	44.44	57.8
TraesCS5B01G015900.1	Wheat	cytosol, extracellular, nucleus	40.89	55.76
TraesCS5B01G015600.1	Wheat	golgi	52.89	53.12
TraesCS6B01G473800.1	Wheat	extracellular	36.89	47.16
TraesCS7B01G483400.1	Wheat	extracellular	36.0	46.82
TraesCS3B01G258200.1	Wheat	endoplasmic reticulum, extracellular	33.33	40.76

Protein Annotations

EnsemblPlants:TraesCS5B01G015500.1	EnsemblPlantsGene:TraesCS5B01G015500	Gene3D:2.60.110.10	InterPro:IPR001938	InterPro:IPR037176	InterPro:Osmotin/thaumatin-like_sf
InterPro:Thaumatin	InterPro:Thaumatin_CS	PANTHER:PTHR31048	PANTHER:PTHR31048:SF42	PFAM:PF00314	PFscan:PS51367
PIRSF:PIRSF002703	PRINTS:PR00347	ScanProsite:PS00316	SEG:seg	SignalP:SignalP-noTM	SMART:SM00205
SUPFAM:SSF49870	TMHMM:TMhelix	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr5B:-:15005004..15005894

Molecular Weight (calculated)

23567.0 Da

IEP (calculated)

7.844

GRAVY (calculated)

-0.096

Length

225 amino acids

Sequence
(BLAST)

001: MAPTRVLHLI ALVLAAAVAA DAATITVVNR CSYTVWPGAL PGGGARLDPG KSWQLNMPAG TAGARVWPRT GCTFDGSGRG RCITGDCGGA LACRVSGQQP
101: TTLAEYTLGQ GGNKDFFDLS VIDGFNVPMS FEPVGGSCRA ARCSTDITKE CLKELQVPGG CASACGKFGG DTYCCRGQFE HNCPPTNYSK FFKGKCPDAY
201: SYAKDDQTST FTCPAGTNYQ IVLCP

Best Arabidopsis Sequence Match ( AT1G75030.1 )
(BLAST)

001: MAKISSIHIL FFVFITSGIA DSATVFTLQN SCAYTVWPGT LSGNSITLGD GGFPLTPGAS VQLTAPTGWS GRFWARTGCN FDASGHGTCV TGDCGGVLKC
101: TGGGVPPATL AEFTVGSSNA GMDFYDVSLV DGYNVKMGIK PQGGFGNCKY AGCVSDINEI CPSELRIMDP NSGSVAACKS ACAAFSSPEF CCTGAHATPQ
201: TCSPTYYSSM FKNACPSAYS YAYDDASSTF TCTGSNYLIT FCPTQS

Arabidopsis Description

ATLP-3At1g75030 [Source:UniProtKB/TrEMBL;Acc:Q9C9P9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.