Factsheet for TraesCS5B01G016000.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, extracellular

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

extracellular: 19786127
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G417700.1	Wheat	extracellular	67.42	92.89
TraesCS5B01G015700.1	Wheat	golgi	70.0	92.34
TraesCS5B01G015500.1	Wheat	golgi	66.77	92.0
TraesCS5B01G016100.1	Wheat	unclear	71.94	86.77
Os12t0630200-01	Rice	extracellular	54.52	71.01
TraesCS5B01G015800.1	Wheat	mitochondrion	40.65	70.0
Zm00001d043121_P001	Maize	extracellular	48.06	67.73
EES01640	Sorghum	extracellular	48.06	65.07
TraesCS5B01G016300.1	Wheat	unclear	45.16	62.5
TraesCS5B01G016200.1	Wheat	extracellular	43.87	59.65
TraesCS4B01G017300.1	Wheat	cytosol, mitochondrion	31.94	57.23
TraesCS5B01G015900.1	Wheat	cytosol, extracellular, nucleus	30.32	56.97
TraesCS5B01G015600.1	Wheat	golgi	39.35	54.46
TraesCS6B01G473800.1	Wheat	extracellular	26.77	47.16
TraesCS7B01G483400.1	Wheat	extracellular	25.81	46.24
TraesCS3B01G258200.1	Wheat	endoplasmic reticulum, extracellular	23.87	40.22

Protein Annotations

EnsemblPlants:TraesCS5B01G016000.1	EnsemblPlantsGene:TraesCS5B01G016000	Gene3D:2.60.110.10	InterPro:IPR001938	InterPro:IPR037176	InterPro:Osmotin/thaumatin-like_sf
InterPro:Thaumatin	InterPro:Thaumatin_CS	PANTHER:PTHR31048	PANTHER:PTHR31048:SF42	PFAM:PF00314	PFscan:PS51367
PIRSF:PIRSF002703	PRINTS:PR00347	ScanProsite:PS00316	SEG:seg	SMART:SM00205	SUPFAM:SSF49870
TMHMM:TMhelix	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:15125537..15126469

Molecular Weight (calculated)

32969.3 Da

IEP (calculated)

9.057

GRAVY (calculated)

-0.184

Length

310 amino acids

Sequence
(BLAST)

001: MRWHNLDSRT IILHAAKRGR RKRRASLLWT IVATGSIAAI NTSTAGESSK PQFTTAARTL PSQTRPRIPR AASSMASTRV LHLIIALVLA VTVATDAATI
101: TVVNRCSYTV WPGALPGGGA RLDPGKSWQL NMPAGTAGAR VWPRTGCTFD GSGRGRCITG DCGGALACSV SGQQPTTLAE YTLGRGGSRD FFDLSVIDGF
201: NTPMSFQPVG GAPCRAATCA VDITRECLPE LKVPGGCASA CGKFGGDTYC CRGQFEHNCP PTNYSRFFKG KCPDAYSYAK DDQTSTFTCP AGTNYQIVLC
301: PARNDLHMDQ

Best Arabidopsis Sequence Match ( AT1G75030.1 )
(BLAST)

001: MAKISSIHIL FFVFITSGIA DSATVFTLQN SCAYTVWPGT LSGNSITLGD GGFPLTPGAS VQLTAPTGWS GRFWARTGCN FDASGHGTCV TGDCGGVLKC
101: TGGGVPPATL AEFTVGSSNA GMDFYDVSLV DGYNVKMGIK PQGGFGNCKY AGCVSDINEI CPSELRIMDP NSGSVAACKS ACAAFSSPEF CCTGAHATPQ
201: TCSPTYYSSM FKNACPSAYS YAYDDASSTF TCTGSNYLIT FCPTQS

Arabidopsis Description

ATLP-3At1g75030 [Source:UniProtKB/TrEMBL;Acc:Q9C9P9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.