Factsheet for TraesCS5A01G017900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 7
golgi 4
plasma membrane 4
endoplasmic reticulum 4
vacuole 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

golgi: 23128297
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

gfp, msms PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G015500.1	Wheat	golgi	96.0	96.0
TraesCS7B01G417700.1	Wheat	extracellular	95.56	95.56
HORVU5Hr1G051970.4	Barley	extracellular	93.78	86.12
TraesCS5A01G018000.1	Wheat	extracellular	87.56	83.83
Os12t0630200-01	Rice	extracellular	73.33	69.33
Zm00001d043121_P001	Maize	extracellular	63.56	65.0
EES01640	Sorghum	extracellular	64.44	63.32
TraesCS5A01G018400.1	Wheat	extracellular	55.56	62.5
TraesCS5A01G018100.1	Wheat	unclear	60.44	60.44
TraesCS4A01G296400.1	Wheat	cytosol	26.22	58.42
TraesCS4A01G296300.1	Wheat	extracellular, unclear	55.11	54.15
TraesCS5A01G018200.1	Wheat	endoplasmic reticulum, extracellular	38.22	50.29
TraesCS5A01G018300.1	Wheat	extracellular	36.44	47.95
TraesCS7A01G558500.1	Wheat	extracellular	36.0	46.82
TraesCS4A01G498000.1	Wheat	extracellular	36.44	46.59
TraesCS2A01G110300.1	Wheat	extracellular	36.44	46.59
TraesCS3A01G226300.1	Wheat	endoplasmic reticulum, extracellular	33.78	41.3
TraesCS5A01G018500.1	Wheat	extracellular	30.22	37.78
TraesCS5A01G019500.1	Wheat	endoplasmic reticulum, extracellular	29.78	36.41

Protein Annotations

Gene3D:2.60.110.10	MapMan:35.1	InterPro:IPR001938	InterPro:IPR037176	InterPro:Osmotin/thaumatin-like_sf	PFAM:PF00314
PIRSF:PIRSF002703	PRINTS:PR00347	ScanProsite:PS00316	PFscan:PS51367	PANTHER:PTHR31048	PANTHER:PTHR31048:SF42
SMART:SM00205	SUPFAM:SSF49870	SignalP:SignalP-noTM	TMHMM:TMhelix	InterPro:Thaumatin	InterPro:Thaumatin_CS
EnsemblPlantsGene:TraesCS5A01G017900	EnsemblPlants:TraesCS5A01G017900.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5A:-:14193486..14194163

Molecular Weight (calculated)

23599.0 Da

IEP (calculated)

7.655

GRAVY (calculated)

-0.079

Length

225 amino acids

Sequence
(BLAST)

001: MASTRVLHLI ALVLAVATAA DAATITVVNR CSYTVWPGAL PGGGVRLDPG QSWALNMPAG TAGARVWPRT GCTFDGSGRG RCITGDCGGT LACRVSGQQP
101: TTLAEYTLGQ GGNKDFFDLS VIDGFNVPMN FEPVGGSCRA ARCATDITKE CLKELQVPGG CASACGKFGG DTYCCRGQFE HNCPPTNYSK FFKGKCPDAY
201: SYAKDDQTST FTCPAGTNYQ IVLCP

Best Arabidopsis Sequence Match ( AT1G19320.1 )
(BLAST)

001: MAIFSTSHLL FISFIIATCT ISVSGTTFTL TNHCGSTIWP GILTANGAQL GDGGFALASG SSVTFTVSPG WSGRFWARTY CNFDASGSGK CGTGDCGSKL
101: KCAGAGGAPP ATLAEFTIGS SGKKNAVQDF YDVSLVDGYN VQMKITPQGG SGDCKTAGCV SDVNAICPKE LQVTGPSGVA ACKSACEAFN KPEYCCTGAY
201: STPATCPPTN YSKIFKQACP SAYSYAYDDA SSTFTCTNAN YEISFCS

Arabidopsis Description

At1g19320 [Source:UniProtKB/TrEMBL;Acc:Q9LN66]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.