Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G051950.1 | Barley | extracellular | 96.2 | 40.64 |
| HORVU5Hr1G005180.1 | Barley | extracellular | 93.67 | 24.67 |
| TraesCS5B01G016100.1 | Wheat | unclear | 58.23 | 17.9 |
| TraesCS5A01G018000.1 | Wheat | extracellular | 53.16 | 17.87 |
| TraesCS5B01G015700.1 | Wheat | golgi | 50.63 | 17.02 |
| HORVU5Hr1G051970.4 | Barley | extracellular | 50.63 | 16.33 |
| Os12t0630200-01 | Rice | extracellular | 40.51 | 13.45 |
| EES01640 | Sorghum | extracellular | 37.97 | 13.1 |
| HORVU5Hr1G005240.1 | Barley | plastid | 40.51 | 12.96 |
| Zm00001d043121_P001 | Maize | extracellular | 32.91 | 11.82 |
| HORVU5Hr1G005300.1 | Barley | extracellular | 25.32 | 11.7 |
| HORVU5Hr1G005190.1 | Barley | extracellular | 32.91 | 11.5 |
| HORVU5Hr1G005290.1 | Barley | extracellular, plastid | 30.38 | 10.48 |
| HORVU7Hr1G122120.1 | Barley | extracellular | 22.78 | 10.4 |
| HORVU3Hr1G056430.1 | Barley | endoplasmic reticulum, extracellular | 24.05 | 10.33 |
| HORVU4Hr1G002650.2 | Barley | extracellular | 27.85 | 8.63 |
| HORVU5Hr1G051960.1 | Barley | cytosol | 0.0 | 0.0 |
| HORVU5Hr1G005310.1 | Barley | cytosol | 0.0 | 0.0 |
| HORVU4Hr1G002640.1 | Barley | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G005510.1 | EnsemblPlantsGene:HORVU5Hr1G005510 | Gene3D:2.60.110.10 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR001938 | InterPro:IPR037176 | InterPro:Osmotin/thaumatin-like_sf | InterPro:Thaumatin | PANTHER:PTHR31048 | PANTHER:PTHR31048:SF42 |
| SEG:seg | SUPFAM:SSF49870 | TMHMM:TMhelix | UniParc:UPI000B476EC5 | UniProt:A0A287Q840 | MapMan:35.2 |
Description
No Description!
Coordinates
chrchr5H:+:8927171..8927409
Molecular Weight (calculated)
7917.5 Da
IEP (calculated)
8.754
GRAVY (calculated)
0.139
Length
79 amino acids
Sequence
(BLAST)
(BLAST)
1: MDARQYNGLH CQSTKPPYSQ TRTAQAMAFS GVVHLIALVI AAAAAATDAT TITVVNRCSY TIWPGALPGG GARLDPXXX
001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN
Arabidopsis Description
OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.