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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 6
  • vacuole 6
  • plasma membrane 5
  • golgi 5
  • cytosol 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, plastid, secretory
BaCelLo:secretory
EpiLoc:vacuole
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:cytosol
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
 extracellular: 18372294
extracellular: 24083427
plastid: 27992503
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 24083427 doi
T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu
Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.
msms PMID: 18372294 doi
T Aki, M Shigyo, R Nakano, T Yoneyama, S Yanagisawa
Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os12t0628600-01 Rice extracellular 89.39 90.4
Os12t0629600-00 Rice extracellular 87.71 88.7
Os12t0630100-01 Rice extracellular 86.03 84.62
OQU79702 Sorghum endoplasmic reticulum, extracellular 75.42 77.59
Os12t0629300-00 Rice extracellular 74.3 76.44
Zm00001d031157_P001 Maize extracellular 75.42 76.27
Zm00001d031155_P001 Maize extracellular 75.42 76.27
Zm00001d031158_P001 Maize extracellular 70.95 72.99
EES17460 Sorghum endoplasmic reticulum, extracellular 70.39 72.41
EES17459 Sorghum endoplasmic reticulum, extracellular 69.83 72.25
EES17457 Sorghum endoplasmic reticulum, extracellular 70.39 71.59
TraesCS4A01G498000.1 Wheat extracellular 64.8 65.91
TraesCS6B01G473800.1 Wheat extracellular 64.8 65.91
TraesCSU01G146600.1 Wheat extracellular 64.8 65.91
TraesCS2A01G110300.1 Wheat extracellular 63.69 64.77
Os03t0663500-00 Rice extracellular 56.42 46.12
Os03t0663400-02 Rice extracellular 49.16 39.64
Os12t0630200-01 Rice extracellular 51.96 39.08
Os12t0630500-01 Rice extracellular 54.75 37.98
Os03t0661600-01 Rice extracellular 57.54 36.65
Protein Annotations
Gene3D:2.60.110.10MapMan:35.1EntrezGene:4352855ProteinID:ABA99918.1EMBL:AK099946ProteinID:BAF30353.1
ProteinID:BAT18202.1InterPro:IPR001938InterPro:IPR037176EnsemblPlantsGene:Os12g0629700EnsemblPlants:Os12t0629700-01InterPro:Osmotin/thaumatin-like_sf
PFAM:PF00314PIRSF:PIRSF002703PRINTS:PR00347ScanProsite:PS00316PFscan:PS51367PANTHER:PTHR31048
PANTHER:PTHR31048:SF13UniProt:Q2QLS9SMART:SM00205SUPFAM:SSF49870SignalP:SignalP-noTMTMHMM:TMhelix
InterPro:ThaumatinInterPro:Thaumatin_CSUniParc:UPI0000680B9FRefSeq:XP_015618555.1SEG:seg:
Description
Similar to Thaumatin-like protein precursor. (Os12t0629700-01)
Coordinates
chr12:-:26946904..26947698
Molecular Weight (calculated)
18096.2 Da
IEP (calculated)
6.925
GRAVY (calculated)
0.174
Length
179 amino acids
Sequence
(BLAST)
001: MASAPAASPA VLVVVVLVAT LAAGGANAAT FTITNRCSFT VWPAATPVGG GTQLSPGQTW TINVPAGTSS GRVWGRTGCN FDGAGRGGCA TGDCGGALSC
101: SLSGRPPMTL AEFTLGGSQD FYDLSVIDGY NVAMSFSCSS GVGLTCRDSR CPDAYLFPSD NSKTHACRGN SNYQVVFCP
Best Arabidopsis Sequence Match ( AT4G11650.1 )
(BLAST)
001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN
Arabidopsis Description
OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.