Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 5
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
23159799
extracellular: 25047395 extracellular: 26072143 |
msms PMID:
26072143
doi
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os12t0628600-01 | Rice | extracellular | 94.92 | 94.92 |
| Os12t0629700-01 | Rice | extracellular | 88.7 | 87.71 |
| Os12t0630100-01 | Rice | extracellular | 83.62 | 81.32 |
| Os12t0629300-00 | Rice | extracellular | 77.97 | 79.31 |
| OQU79702 | Sorghum | endoplasmic reticulum, extracellular | 77.4 | 78.74 |
| Zm00001d031157_P001 | Maize | extracellular | 77.4 | 77.4 |
| Zm00001d031155_P001 | Maize | extracellular | 77.4 | 77.4 |
| Zm00001d031158_P001 | Maize | extracellular | 75.14 | 76.44 |
| EES17460 | Sorghum | endoplasmic reticulum, extracellular | 72.88 | 74.14 |
| EES17459 | Sorghum | endoplasmic reticulum, extracellular | 72.32 | 73.99 |
| EES17457 | Sorghum | endoplasmic reticulum, extracellular | 71.75 | 72.16 |
| TraesCS4A01G498000.1 | Wheat | extracellular | 67.8 | 68.18 |
| TraesCSU01G146600.1 | Wheat | extracellular | 67.8 | 68.18 |
| TraesCS6B01G473800.1 | Wheat | extracellular | 67.23 | 67.61 |
| TraesCS2A01G110300.1 | Wheat | extracellular | 66.67 | 67.05 |
| Os03t0663500-00 | Rice | extracellular | 57.06 | 46.12 |
| Os03t0663400-02 | Rice | extracellular | 49.15 | 39.19 |
| Os12t0630200-01 | Rice | extracellular | 51.41 | 38.24 |
| Os12t0630500-01 | Rice | extracellular | 54.8 | 37.6 |
| Os03t0661600-01 | Rice | extracellular | 57.06 | 35.94 |
Protein Annotations
| Gene3D:2.60.110.10 | MapMan:35.1 | EntrezGene:4352854 | UniProt:A0A0P0YCG8 | ProteinID:BAT18201.1 | InterPro:IPR001938 |
| InterPro:IPR037176 | EnsemblPlantsGene:Os12g0629600 | EnsemblPlants:Os12t0629600-00 | InterPro:Osmotin/thaumatin-like_sf | PFAM:PF00314 | PIRSF:PIRSF002703 |
| PRINTS:PR00347 | ScanProsite:PS00316 | PFscan:PS51367 | PANTHER:PTHR31048 | PANTHER:PTHR31048:SF13 | SMART:SM00205 |
| SUPFAM:SSF49870 | SignalP:SignalP-noTM | TMHMM:TMhelix | InterPro:Thaumatin | InterPro:Thaumatin_CS | UniParc:UPI0003938B10 |
| RefSeq:XP_015618557.1 | SEG:seg | : | : | : | : |
Description
Thaumatin-like protein. (Os12t0629600-00)
Coordinates
chr12:-:26932273..26933292
Molecular Weight (calculated)
18002.0 Da
IEP (calculated)
4.614
GRAVY (calculated)
0.119
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPATSSAI LVVVLVASLA AGGANAATFT ITNRCSFTVW PAATPVGGGR QLSPGDTWTI NVPAGTSSGR VWGRTGCSFD GSGRGSCATG DCGGALSCTL
101: SGQPPLTLAE FTIGGSQDFY DLSVIDGYNL PMSFSCSSGV TVTCRDSRCP DAYLFPEDNT KTHACGGNSN YQVVFCP
101: SGQPPLTLAE FTIGGSQDFY DLSVIDGYNL PMSFSCSSGV TVTCRDSRCP DAYLFPEDNT KTHACGGNSN YQVVFCP
001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN
Arabidopsis Description
OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.