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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 4
  • vacuole 5
  • plasma membrane 4
  • golgi 4
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, secretory
BaCelLo:secretory
EpiLoc:vacuole
MultiLoc:extracellular
Plant-mPloc:cytosol
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:extracellular
 extracellular: 24083427
plastid: 27992503
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 24083427 doi
T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu
Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os12t0630200-01 Rice extracellular 65.12 70.59
Zm00001d043121_P001 Maize extracellular 56.98 66.82
EES01640 Sorghum extracellular 55.81 62.88
Os03t0663500-00 Rice extracellular 52.33 61.64
Os12t0630100-01 Rice extracellular 39.92 56.59
Os12t0628600-01 Rice extracellular 37.98 55.37
Os12t0629600-00 Rice extracellular 37.6 54.8
Os12t0629700-01 Rice extracellular 37.98 54.75
Os03t0663400-02 Rice extracellular 46.12 53.6
Os12t0629300-00 Rice extracellular 34.5 51.15
Os03t0661600-01 Rice extracellular 51.55 47.33
Protein Annotations
Gene3D:2.60.110.10MapMan:35.1ProteinID:ABA99924.1EMBL:AK243287ProteinID:BAF30356.1ProteinID:BAT18205.1
InterPro:IPR001938InterPro:IPR037176EnsemblPlantsGene:Os12g0630500EnsemblPlants:Os12t0630500-01InterPro:Osmotin/thaumatin-like_sfPFAM:PF00314
PIRSF:PIRSF002703PRINTS:PR00347ScanProsite:PS00316PFscan:PS51367PANTHER:PTHR31048PANTHER:PTHR31048:SF42
UniProt:Q2QLS3SMART:SM00205SUPFAM:SSF49870SignalP:SignalP-noTMTMHMM:TMhelixInterPro:Thaumatin
InterPro:Thaumatin_CSUniParc:UPI0000680B99SEG:seg:::
Description
Similar to Thaumatin-like protein. (Os12t0630500-01)
Coordinates
chr12:-:26980121..26981082
Molecular Weight (calculated)
26521.2 Da
IEP (calculated)
5.024
GRAVY (calculated)
-0.029
Length
258 amino acids
Sequence
(BLAST)
001: MEPSISRRRR IDIALVSLLL LAAAAAAVDA ATITMVNRCS YTVWPGALPG GGARLDPGQS WSISVAAGTP AARIWPRTGC SFDGAGRGRC ATGDCAGALS
101: CAVSGEPPTT LAEYTLGRPG AGGDDFLDLS LIDGFNVPVS FQPANGGGAR CSKGRGPSCA VDITARCLPE LRVPGGCASA CGKFGGDTYC CRGRFEHVCP
201: PTSYSMFFKG LCPDAYSYAK DDQTSTFTCP AGTNYRVDFC PPTSGVTAGD EDDEIASA
Best Arabidopsis Sequence Match ( AT4G11650.1 )
(BLAST)
001: MANLLVSTFI FSALLLISTA TAATFEILNQ CSYTVWAAAS PGGGRRLDAG QSWRLDVAAG TKMARIWGRT NCNFDSSGRG RCQTGDCSGG LQCTGWGQPP
101: NTLAEYALNQ FNNLDFYDIS LVDGFNIPME FSPTSSNCHR ILCTADINGQ CPNVLRAPGG CNNPCTVFQT NQYCCTNGQG SCSDTEYSRF FKQRCPDAYS
201: YPQDDPTSTF TCTNTNYRVV FCPRSRLGAT GSHQLPIKMV TEEN
Arabidopsis Description
OSM34OSM34 [Source:UniProtKB/TrEMBL;Acc:A0A178V0T2]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.