CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
extracellular 2
mitochondrion 4
golgi 2
plasma membrane 3
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	extracellular
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048902_P004	Maize	plasma membrane	93.76	93.76
KXG33509	Sorghum	mitochondrion	94.0	93.35
Os01t0778700-01	Rice	plasma membrane	81.76	80.82
HORVU3Hr1G076520.1	Barley	plasma membrane	81.06	80.69
TraesCS3D01G312800.1	Wheat	plasma membrane	79.68	79.68
TraesCS3A01G318400.1	Wheat	plasma membrane	79.91	79.54
TraesCS3B01G347500.1	Wheat	plasma membrane	79.45	79.45
EER99579	Sorghum	plasma membrane	53.58	54.98

Protein Annotations

MapMan:35.1	EntrezGene:8074356	UniProt:C5Y5V1	EnsemblPlants:EES08797	ProteinID:EES08797	ProteinID:EES08797.1
GO:GO:0000407	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0006810	GO:GO:0006887	GO:GO:0007029	GO:GO:0007030	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	PFAM:PF09335	PANTHER:PTHR10281	PANTHER:PTHR10281:SF68
InterPro:SNARE_assoc	EnsemblPlantsGene:SORBI_3005G177700	unigene:Sbi.15794	TMHMM:TMhelix	UniParc:UPI0001A8642D	RefSeq:XP_002449809.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:65962050..65970028

Molecular Weight (calculated)

48312.7 Da

IEP (calculated)

10.041

GRAVY (calculated)

0.282

Length

433 amino acids

Sequence
(BLAST)

001: MGRRKMSAAA PPSRSWSNVG GSVIPELRAK HKMDLENLTL TKQPLRTLHL FLLAMLQYLK RVAKYILSKG GLFFLLIVLV VAPGILLAIS DGVHKKHVQE
101: FLNYAKFVLW WVSLGVASSI GLGSGLHTFV LYLGPHIALF TIKAVQCGRI DLKMAPYDTI QLKVGPSWLD KKCSEFGPPV YPASAHSVRI PVFDLLPQIQ
201: LEAVLWGIGT ALGELPPYFI SRAARLSGSK SKAVKELDVA TSKQDGTVAS TLNRTKRWLL SHSQHLNFFS ILILASVPNP LFDLAGIMCG QFGVPFWEFF
301: FATLIGKAII KTHIQTLFIV SLCNNQLLYL MEKELIWIFG HIPGFSATLP SVIAKLNAAK DKYLSPPTPV SPSSQMEEKQ WNFSFTLVWN SIVWLVLLNF
401: FIKIITSTAQ DYLKKQQDME MELISDSPTL EQN

Best Arabidopsis Sequence Match ( AT4G14950.1 )
(BLAST)

001: MGSAGVASSS SDVAISALRE KHEKEVENLT LTTQPLNTLK LFVEATIQYI KRSISYLLAH GGWFILITTL LVVSGGLLVT VDGPHGKHVE EVLEYVRYGL
101: WWIALGVASS IGLGSGLHTF VLYLGPHIAL FTLKATLCGR VDLKSAPYDT IQLKRVPSWL DKSCSEFGPP LMISAAGSRV PLTSILPQVQ LEAILWGIGT
201: ALGELPPYFI SRAASISGST VDGMEELDGS STEDSGFMAT HLNRVKRWLL THSQHLNFFT VLVLASVPNP LFDLAGIMCG QFGIPFWEFF LATLIGKAII
301: KTHIQTIFII CVCNNQLLDW MENELIWILS HVPGLASMLP GLTAKLHAMK EKYIDAPSPV PSHIKVKKWD FSFASIWNGI VWLMLLNFFV KIVTATAQRH
401: LKKKQEKEMA TLTHSD

Arabidopsis Description

KMS1Vacuole membrane protein KMS1 [Source:UniProtKB/Swiss-Prot;Acc:Q5XF36]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.