Factsheet for GSMUA_Achr10P09930_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 2
peroxisome 4
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G306200.1	Wheat	peroxisome	17.67	53.02
TraesCS2D01G304600.1	Wheat	peroxisome	17.67	53.02
TraesCS2B01G322900.1	Wheat	peroxisome	17.45	52.35
OQU81612	Sorghum	cytosol, nucleus, peroxisome	16.78	48.7
Zm00001d003630_P001	Maize	extracellular	16.78	48.7
Zm00001d025445_P001	Maize	extracellular	16.78	48.7
Os04t0436100-01	Rice	cytosol	16.33	47.71
HORVU2Hr1G076160.3	Barley	cytosol	10.74	38.4
GSMUA_Achr9P00370_001	Banana	mitochondrion	17.67	38.35
GSMUA_Achr5P28830_001	Banana	cytosol	10.07	28.48

Protein Annotations

EnsemblPlants:GSMUA_Achr10P09930_001	EnsemblPlants:GSMUA_Achr10T09930_001	EnsemblPlantsGene:GSMUA_Achr10G09930_001	Gene3D:3.10.129.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0016787	GO:GO:0047617	InterPro:HotDog_dom_sf	InterPro:PAAI_dom	InterPro:Thioestr_dom	PANTHER:PTHR21660
PANTHER:PTHR21660:SF15	PFAM:PF03061	SEG:seg	SUPFAM:SSF54637	TIGRFAMs:TIGR00369	UniParc:UPI000296464C
UniProt:M0RGW9	MapMan:35.2	:	:	:	:

Description

Putative Acyl-coenzyme A thioesterase 13 [Source:GMGC_GENE;Acc:GSMUA_Achr10G09930_001]

Coordinates

chr10:-:19567192..19570815

Molecular Weight (calculated)

48806.1 Da

IEP (calculated)

5.850

GRAVY (calculated)

-0.032

Length

447 amino acids

Sequence
(BLAST)

001: MEGSALPCLR CQGLSSTPLT EDASTFCTSL TEDLKGLELS LAKDSISLRW FVEAMSVLKR MQVRLLALLK KSELPISCEA EDWFDQYMQE SASLLDFCNS
101: MKSALSGINR SRMALKLAVH KLSEDNEFGL ERLQKAHEEI LDFSIEKERL GLAKGGILLG GNGRDDKNMA IVMFAAKTTV TVLSWFMISA MISPVPVNME
201: DKELTSSIPE LQQCMEMLTR ISSLGIGREV ALVEHEMVNE AVEELQAAEK NSHSFLSVHD PPIIRQKIFR TSYPSPPCAD HRPPSTGHRG CRTDQDMMDP
301: EAVKKYLTES AGNAVAALPA RFFDVLVLNG LRLDLFEPGR VLCSYAVPPR LSSSGNVLHG GVVATLVDVV GSAAIISSGL PTTGVSLDIN VSYLDPAFTG
401: EEIEMESKLL HAGKAVAVAS VEFRNKRTGK LLAQGRHTKY LAASSKL

Best Arabidopsis Sequence Match ( AT1G04290.1 )
(BLAST)

001: MDLESVKKYL EGDEDEKAKE PMVAKLPHRF LERFVTNGLK VDLIEPGRIV CSMKIPPHLL NAGKFLHGGA TATLVDLIGS AVIYTAGASH SGVSVEINVS
101: YLDAAFLDEE IEIESKALRV GKAVAVVSVE LRKKTTGKII AQGRHTKYFA PRSNL

Arabidopsis Description

F19P19.27 protein [Source:UniProtKB/TrEMBL;Acc:P93828]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.