Factsheet for GSMUA_Achr3P18480_001

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 2
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

unclear: 20177697

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	37.2	80.21
VIT_13s0084g00050.t01	Wine grape	cytosol	67.15	69.15
CDY42150	Canola	cytosol	65.7	67.0
Bra038725.1-P	Field mustard	cytosol	65.22	65.85
CDY50343	Canola	cytosol	64.73	65.37
GSMUA_Achr11P...	Banana	cytosol	29.95	62.63
PGSC0003DMT400068064	Potato	cytosol	58.94	60.7
Bra034755.1-P	Field mustard	extracellular	64.25	59.64
CDY08429	Canola	extracellular	65.22	58.95
AT3G12490.2	Thale cress	extracellular	65.7	58.12
GSMUA_Achr11P...	Banana	cytosol	28.02	56.86
KRH20612	Soybean	endoplasmic reticulum	67.15	56.73
CDY08430	Canola	extracellular	63.77	56.41
KRH13275	Soybean	mitochondrion	65.7	55.51
CDY50523	Canola	cytosol	38.16	52.67
Solyc03g097270.2.1	Tomato	extracellular	57.97	51.06
CDY03938	Canola	extracellular	50.72	50.0
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, vacuole	21.26	19.05

Protein Annotations

Gene3D:3.10.450.10	Gene3D:3.10.450.650	MapMan:35.1	InterPro:Cystatin	InterPro:Cystatin_dom	GO:GO:0003674
GO:GO:0004869	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010466	GO:GO:0010951
GO:GO:0019538	GO:GO:0030234	GO:GO:0030414	EnsemblPlantsGene:GSMUA_Achr3G18480_001	EnsemblPlants:GSMUA_Achr3P18480_001	EnsemblPlants:GSMUA_Achr3T18480_001
UniProt:M0SFR4	PFAM:PD001231	PFAM:PF16845	PANTHER:PTHR11413	PANTHER:PTHR11413:SF56	SMART:SM00043
SUPFAM:SSF54403	UniParc:UPI0002947EB8	SEG:seg	:	:	:

Description

Cysteine proteinase inhibitor 12 [Source:GMGC_GENE;Acc:GSMUA_Achr3G18480_001]

Coordinates

chr3:-:19899502..19904442

Molecular Weight (calculated)

23094.5 Da

IEP (calculated)

6.656

GRAVY (calculated)

-0.468

Length

207 amino acids

Sequence
(BLAST)

001: MAAMVGGLKE SEGSQNSAEI EELARFAVDE HNKKENALLE FARVVKAKEQ VVTGTLHHLT VEAIDAGKKK LYEAKVWVKP WLHFKELQDF KHVADSGSLT
101: AADLGAKRGE HGPGWRTVPA HDPVVKDAAH HAVQTIQQRS NSLAPYELLE VLLARAEVVE DIAKFDMLIK VKRGSKEEKL KVEVHKDLEG TFHLNQMQQE
201: HLESASQ

Best Arabidopsis Sequence Match ( AT3G12490.2 )
(BLAST)

001: MMRSRFLLFI VFFSLSLFIS SLIASDLGFC NEEMALVGGV GDVPANQNSG EVESLARFAV DEHNKKENAL LEFARVVKAK EQVVAGTLHH LTLEILEAGQ
101: KKLYEAKVWV KPWLNFKELQ EFKPASDAPA ITSSDLGCKQ GEHESGWREV PGDDPEVKHV AEQAVKTIQQ RSNSLFPYEL LEVVHAKAEV TGEAAKYNML
201: LKLKRGEKEE KFKVEVHKNH EGALHLNHAE QHHD

Arabidopsis Description

CYS6Cysteine proteinase inhibitor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0X6]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.